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A Cancer-Favoring, Engineered Vaccinia Virus for Cholangiocarcinoma - MDPI
cancers
Communication
A Cancer-Favoring, Engineered Vaccinia Virus
for Cholangiocarcinoma
So Young Yoo 1,2, * , Narayanasamy Badrinath 3 , Hye Lim Lee 2 , Jeong Heo 3 and
Dae-Hwan Kang 2,3
 1   BIO-IT Foundry Technology Institute, Pusan National University, Busan 46241, Korea
 2   Research Institute for Convergence of Biomedical Science and Technology, Pusan National University
     Yangsan Hospital, Yangsan 50612, Korea; roasua@hanmail.net (H.L.L.); sulsulpul@naver.com (D.-H.K.)
 3   Biomedical Sciences, School of Medicine, Pusan National University, Yangsan 50612, Korea;
     badrisamy@gmail.com (N.B.); sodium@korea.com (J.H.)
 *   Correspondence: yoosy2@gmail.com; Tel.: +82-51-510-3417
                                                                                                    
 Received: 14 October 2019; Accepted: 24 October 2019; Published: 27 October 2019                   

 Abstract: While oncolytic vaccinia virus-based therapy has shown promising results for uncured
 patients with cancer, its effects on cholangiocarcinoma (CCA) remain unclear. Here, we evaluated
 the anti-cancer activity of the cancer-favoring oncolytic vaccinia virus (CVV), which was recognized
 as a promising therapy for stem cell-like colon cancer cells (SCCs) and metastatic hepatocellular
 carcinoma (HCC) in previous studies. CCA presents major challenges, such as clinical complexity,
 stem cell cancer characteristics, a high refractory rate, resistance to conventional therapy, and a dismal
 prognosis. In the present study, we confirmed the oncolytic activity of the CVV in CCA with a slightly
 alkaline microenvironment (pH 7–8), in which the CVV was stable and highly effective at infecting
 CCA. Taken together, our findings suggest that CVV-based therapy is highly suitable for the treatment
 of CCA.

 Keywords:      cholangiocarcinoma (CCA); cancer-favoring vaccinia virus (CVV); alkaline
 extracellular microenvironment

1. Introduction
      DNA recombination technology provides unprecedented opportunities to utilize viruses for
biomedical applications, including tissue engineering, drug/gene delivery, targeting/imaging, etc. [1–6].
Virotherapy utilizes engineered viruses via the above technologies as therapeutics to cure diseases [4,7,8].
Oncolytic viruses (OVs) are unique nanomedicines with merits over conventional anti-cancer drugs
in terms of their tumor selectivity and killing mechanism [9]. Selectivity can be achieved by either
genetic engineering or evolutionary bioselection, which attenuates viral replication in normal cells [10].
Strategies depend on disrupting genes that are critical for the virus to replicate in host cells, but that
are limited in normal cells and redundant in cancer cells. For the vaccinia virus (VV), the most popular
gene for disruption encodes the vaccinia thymidine kinase enzyme (vTk); the disruption of this gene
results in the preferred replication of VV in cancer cells with high cellular TK expression [11,12].
      A refractory cancer one that is resistant to conventional therapy [13,14]; cholangiocarcinoma
(CCA) is curable only in its early stage by surgical removal of the tumor mass, but it becomes complex
and refractory in later stages, with a dismal prognosis. Therefore, therapeutics with a new mode of
action should be developed and employed to treat CCA. OVs have shown promising results for treating
various cancers [3,7,15,16]. In our previous study, clinically, JX-594 demonstrated tumor selectivity
via viral thymidine kinase (vTK) inactivation because cancer cells have high cellular TK levels due to
Epidermal growth factor receptor (EGFR) pathway activation, in which the VV was evolved to replicate

Cancers 2019, 11, 1667; doi:10.3390/cancers11111667                             www.mdpi.com/journal/cancers
A Cancer-Favoring, Engineered Vaccinia Virus for Cholangiocarcinoma - MDPI
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Cancers 2019, 11, 1667                                                                                                        2 of 11

  levels due to Epidermal growth factor receptor (EGFR) pathway activation, in which the VV was
  evolved toinreplicate
selectively          tumors.selectively
                                 Engineered    in VVs
                                                   tumors.haveEngineered      VVs have
                                                                 also been shown           also been shown
                                                                                       to successfully           to successfully
                                                                                                          kill even    cancer stem kill
  even     cancer    stem    cell-like  cancers     using   mechanisms       different   from   conventional
cell-like cancers using mechanisms different from conventional anti-cancer drugs [15,16]. Specifically,           anti-cancer   drugs
we[15,16].
     developedSpecifically,     we developed
                      an evolutionary                an evolutionary
                                            cancer-favoring               cancer-favoring
                                                                   engineered   vaccinia virusengineered
                                                                                                  (CVV) and  vaccinia   virus (CVV)
                                                                                                                  demonstrated    its
  and    demonstrated         its  ability   to  selectively    and   efficiently  find   and  kill stem
ability to selectively and efficiently find and kill stem cell-like colon cancers [15]. CVV was evolved     cell-like  colon  cancers
  [15].Wyeth
from      CVV was       evolved
                   strain   vacciniafrom    Wyeth
                                        virus.    Thestrain   vaccinia
                                                        evolution    wasvirus.   The evolution
                                                                           achieved    by isolation wasofachieved
                                                                                                          Wyeth strainby isolation
                                                                                                                           vacciniaof
  Wyeth
virus    fromstrain   vaccinia
                the blood      of virus  fromvirus-injected
                                  a vaccinia      the blood of aVX2  vaccinia
                                                                          tumorvirus-injected
                                                                                  animal model.  VX2Thetumor    animal
                                                                                                           isolation   of model.  The
                                                                                                                          virus was
  isolation    of   virus    was   done    during     the  tumor    volume    reduction,    which
done during the tumor volume reduction, which released viruses in into the serum. From that process, released    viruses  in into  the
  serum.     From     that  process,    we   got   evolved    virus   (called EVV),    and  subsequently,
we got evolved virus (called EVV), and subsequently, we engineered EVV by deleting the Tk gene to              we  engineered    EVV
  bythe
get     deleting    the Tk
           virus with         gene tocancer
                          enhanced       get theselectivity
                                                     virus with     enhanced
                                                                (called   CVV).cancer     selectivity
                                                                                 The higher            (called CVV).
                                                                                                cancer-favoring           The higher
                                                                                                                     characteristics
  cancer-favoring         characteristics       of  the  CVV    were    successfully    utilized  as  a
of the CVV were successfully utilized as a strategic therapeutic for metastatic hepatocellular carcinomastrategic    therapeutic   for
  metastatic
(HCC)       and hepatocellular
                  induced complete    carcinoma        (HCC)
                                              regression     of and
                                                                 liverinduced   completeand
                                                                        tumorigenicity       regression
                                                                                                 metastasisof liver  tumorigenicity
                                                                                                                to the   colon [16].
However, few studies have dealt with CCA in terms of utilizing an OV as a treatment.ofCCA
  and    metastasis      to  the  colon  [16].   However,      few   studies   have   dealt  with  CCA    in  terms      utilizing
                                                                                                                               has aan
  OV     as  a  treatment.      CCA     has    a  different    appearance      and   tumor    localization
different appearance and tumor localization from other cancers. Furthermore, it is generally thought          from    other  cancers.
  Furthermore,
that    cancers have   it isa generally     thought
                              slightly acidic            that cancers have
                                                   microenvironment             a slightly
                                                                             [17,18]  comparedacidictomicroenvironment
                                                                                                       normal cells. However,  [17,18]
  compared       to   normal     cells. However,        the  pH   of CCA    may   be  different   from
the pH of CCA may be different from general cancers because it is associated with the bile duct, and bilegeneral    cancers  because
  it isa associated
has                     with the
         slightly alkaline      pHbile
                                     (i.e.,duct,   and bile has a slightly alkaline pH (i.e., pH 7–8).
                                            pH 7–8).

2.2.Results
     Results

 2.1.Cancer-Favoring,
2.1.  Cancer-Favoring,Evolutionarily-Engineered
                       Evolutionarily-EngineeredVaccinia
                                                 VacciniaVirus
                                                          Virus
       TheCVV
      The    CVVwaswas  generated
                      generated     through
                                 through       evolution
                                           evolution        ofWyeth
                                                       of the  the Wyeth
                                                                      strainstrain
                                                                             of theof the
                                                                                    VV,   VV, deletion
                                                                                        deletion          of thymidine
                                                                                                  of thymidine kinase,
  kinase,
and         and of insertion
     insertion                  of the green
                    the green fluorescence  protein fluorescence    protein (GFP) and
                                                    (GFP) and guanine-hypoxanthine             guanine-hypoxanthine
                                                                                          phosphoribosyltransferase
  phosphoribosyltransferase
(GPT)                         (GPT)1a).
       selection markers (Figure      selection
                                         Real-timemarkers
                                                      qPCR (Figure      1a). Real-time
                                                              results indicated   a lowerqPCR    results
                                                                                          expression    of indicated
                                                                                                           vTK and a a
  lowerexpression
higher    expressionofofGFP
                         vTKinand   a higher expression
                                 CVV-infected   cancer celloflines
                                                                GFP(HeLa).
                                                                     in CVV-infected     cancer celloflines
                                                                              A higher expression        vTK(HeLa).
                                                                                                              and theA
  higher
lack       expressionofofGFP
     of expression        vTKwere
                                and also
                                     the lack  of expression
                                          confirmed              of GFP
                                                        in wild-type      were
                                                                       (WT)      also confirmed
                                                                              VV-infected          in wild-type
                                                                                            cell lines           (WT)
                                                                                                        (Figure 1b,c).
  VV-infected
These           cell lines (Figure
       results confirmed            1b,c). These
                            GFP expression         results
                                               in the  CVV. confirmed GFP expression in the CVV.

        Figure1. 1.(a)(a)
      Figure           The   cancer-favoring
                           The   cancer-favoring oncolytic  vaccinia
                                                     oncolytic        virusvirus
                                                                vaccinia    (CVV)   was engineered
                                                                                  (CVV)             from the
                                                                                          was engineered       Wyeth
                                                                                                            from the strain
                                                                                                                       Wyeth
      ofstrain
         the vaccinia
                of the virus     (VV).
                           vaccinia     The (VV).
                                     virus          The vTk
                                             viral gene       was
                                                          viral    deleted
                                                                gene        and the
                                                                       vTk was       GFP and
                                                                                  deleted andGPT
                                                                                               the selection
                                                                                                   GFP andmarkers      were
                                                                                                               GPT selection
      inserted  along     the  sides of the  early/late promoters,   and  then  CVV   was evolved  and
        markers were inserted along the sides of the early/late promoters, and then CVV was evolved andselected after  serial
      culture  in serum
        selected            of infected
                    after serial   cultureand   responded
                                            in serum         tumor model.
                                                        of infected          (b) vTk expression
                                                                     and responded               in WT
                                                                                       tumor model.   (b)and
                                                                                                          vTkCVV-infected
                                                                                                               expression in
      HeLa   cancer    cell  lines. Experiments     were   done  in triplicate. (c) Confirmation of GFP
        WT and CVV-infected HeLa cancer cell lines. Experiments were done in triplicate. (c) Confirmation expression  in the
      CVV-infected       HeLa    cancer  cell line. Experiments     were  done   in duplicate.
        of GFP expression in the CVV-infected HeLa cancer cell line. Experiments were done in duplicate.
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 2.2.High
2.2.  HighReplication
           ReplicationEfficacy
                       Efficacyofofthe
                                    theCVV
                                        CVVininCCA
                                                CCACell
                                                    CellLines
                                                         Linesand
                                                               andTumors
                                                                   Tumors

      ToToevaluate
            evaluate thethe  replication
                         replication        efficacy
                                       efficacy   of theofCVV
                                                            the in
                                                                 CVV CCA, in HuCCT1
                                                                              CCA, HuCCT1         and SNU1196
                                                                                         and SNU1196       cells werecells  were
                                                                                                                       infected
 infected
with  a 0.1with    a 0.1 multiplicity
             multiplicity    of infectionof (MOI)
                                            infection    (MOI)
                                                     of the   WToforthe CVV.WTInfected
                                                                                 or CVV.cellInfected
                                                                                               lysatescell  lysates
                                                                                                         were   usedwere     used
                                                                                                                       to infect
 to  infect   U2OS    cells  for  replicated     virus   titration.   The    results   indicated    the
U2OS cells for replicated virus titration. The results indicated the superior replication efficacy of thesuperior    replication
 efficacy
CVV         of the
       relative      CVV
                 to the  WTrelative
                              in both to
                                       cellthe   WT
                                             lines     in both
                                                    (Figure       cellFurthermore,
                                                               2a,b).    lines (Figurethe  2a,b).  Furthermore,
                                                                                             results   confirmed the the robust
                                                                                                                          results
 confirmedofthe
infectivity      therobust
                      CVV infectivity
                            in the CCAofcell thelines.
                                                  CVV Thein the  CCA efficacy
                                                               higher    cell lines.ofThe
                                                                                       CVV higher  efficacy
                                                                                             in cancer    canof  CVV
                                                                                                               give itsin  cancer
                                                                                                                        greater
 can  give   its greater  cancer   selectivity.   To  test  in  vivo  tumor     selectivity  and   safety,
cancer selectivity. To test in vivo tumor selectivity and safety, tumor tissues and normal organ tissues    tumor   tissues   and
 normal
were       organ tissues
      harvested     2 weekswere
                              afterharvested      2 weeks
                                    intraperitoneal          after intraperitoneal
                                                          injection  of the virus from   injection   of the virus from
                                                                                            HT29-xenografted       nude HT29-
                                                                                                                           mice.
 xenografted
They   showednude        mice.and
                  exclusive     They   showed
                                    robust    CVV  exclusive
                                                      infection andin robust
                                                                       tumorsCVV withinfection    in tumors
                                                                                         negligible   effects onwith
                                                                                                                  thenegligible
                                                                                                                        normal
 effects
bile ductoncells
              the (Figure
                   normal bile
                            2c). duct
                                  These cells  (Figure
                                          results        2c). These
                                                     confirmed      theresults   confirmed infection
                                                                          tumor-selective     the tumor-selective
                                                                                                           of the CVVinfection
                                                                                                                          in the
 of the
CCA      CVV in the CCA model.
       model.

        Figure2.2.Replication
      Figure       Replicationefficacy
                                 efficacyofofthe
                                               theCVV
                                                   CVVinincholangiocarcinoma
                                                              cholangiocarcinoma(CCA)
                                                                                    (CCA)cell
                                                                                            celllines
                                                                                                  linesand
                                                                                                         andtumors.
                                                                                                              tumors.The
                                                                                                                       TheWT WT
      ororCVV   (0.1 multiplicity    of  infection  (MOI))     was used to   infect HuCCT1    and    SNU1196
           CVV (0.1 multiplicity of infection (MOI)) was used to infect HuCCT1 and SNU1196 cells. After           cells. After24,
      24,
        48,48,
            andand
                 7272  h of
                     h of    infection,
                           infection,      cells
                                        cells    were
                                              were     harvested.
                                                     harvested.     Virus
                                                                  Virus     titration
                                                                        titration     was
                                                                                    was    performed
                                                                                        performed         using
                                                                                                        using  U2OSU2OS   cells.
                                                                                                                       cells. (a)
      (a)  Replication  efficacy  of  the   WT   and  CVV     in HuCCT1   cells.   Experiments     were
        Replication efficacy of the WT and CVV in HuCCT1 cells. Experiments were done in duplicate. (b)   done   in duplicate.
      (b)  Replication
        Replication      efficacy
                      efficacy  of of
                                   thetheWT WT   and
                                               and    CVV
                                                    CVV     inin SNU1196
                                                               SNU1196     cells.
                                                                        cells.     Experiments
                                                                                Experiments   were were   done
                                                                                                       done   in in duplicate.
                                                                                                                  duplicate.  (c)
      (c) The  bio-distribution  of  the  WT   and  CVV    in HT29-xenograft    nude  mice confirms     the
        The bio-distribution of the WT and CVV in HT29-xenograft nude mice confirms the tumor selectivity   tumor   selectivity
      ofofthe
           theCVV
               CVV(compared
                     (comparedtotothe  theWT)
                                            WT)ininthis
                                                     thisininvivo  model(n(n==3).
                                                              vivomodel         3).
2.3. Oncolytic Efficacy of the CVV Enhances the Therapeutic Efficacy of Chemotherapeutic Drugs In Vitro
 2.3. Oncolytic Efficacy of the CVV Enhances the Therapeutic Efficacy of Chemotherapeutic Drugs In Vitro
      Next, to evaluate the cytotoxicity of the CVV in CCA cells, the HuCCT1, SNU245, SNU478,
       Next, to evaluate
and SNU1196      cell linesthe
                             werecytotoxicity
                                      used. Cellsof the
                                                     were CVV   in CCA
                                                             seeded    in cells,
                                                                          96-welltheplates
                                                                                      HuCCT1,
                                                                                            and SNU245,
                                                                                                the CVV SNU478,
                                                                                                           or WT was   and
 SNU1196
used        cell linesat
      for infections    were
                           0.01,used.
                                  0.1, Cells
                                        1, 10, were
                                                and 20seeded
                                                          MOIs.in 96-well
                                                                  To monitorplates   and theand
                                                                                  cisplatin   CVV   or WT was toxicity,
                                                                                                 gemcitabine     used for
these drugs were used at concentrations of 0.1–100 µM. The WST-1 assays indicated robustdrugs
 infections at  0.01, 0.1, 1, 10,  and   20  MOIs.   To   monitor   cisplatin  and   gemcitabine   toxicity, these   and
 were  used  at concentrations       of 0.1–100   µM.    The  WST-1    assays  indicated   robust
dose-dependent cytotoxicity of the CVV in four different CCA cell lines (Figure 3a). Gemcitabine  and   dose-dependent
 cytotoxicity
showed          of the CVVinin
         high cytotoxicity       allfour    different
                                      cell lines exceptCCA     cell (Figure
                                                          SNU245     lines (Figure
                                                                              3b), and3a).
                                                                                        mostGemcitabine   showed
                                                                                              CCA cells were          high
                                                                                                                resistant
 cytotoxicity  in all cell lines  except    SNU245     (Figure  3b), and   most   CCA   cells were
to cisplatin (Figure 3b). The combined treatment of the CVV and cisplatin showed higher cellular   resistant  to cisplatin
 (Figurein3b).
toxicity        The combined
           HuCCT1      and SNU478   treatment     of while
                                         cell lines, the CVV     and cisplatin
                                                            the combined           showed
                                                                             treatment       higher
                                                                                         of the CVVcellular    toxicity in
                                                                                                       and gemcitabine
 HuCCT1 and SNU478 cell lines, while the combined treatment of the CVV and gemcitabine led to
 higher cellular toxicity in SNU1196 and SNU245 (Figure 3c). These results indicated that CVV
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 led to higher cellular toxicity in SNU1196 and SNU245 (Figure 3c). These results indicated that
monotreatment
 CVV monotreatment also works   well inwell
                         also works      CCA,  inwhich
                                                  CCA, is  very is
                                                         which   resistant  to conventional
                                                                    very resistant             anticancer
                                                                                    to conventional        drugs,
                                                                                                       anticancer
such
 drugs, such as gemicitabine and cisplatin. The reason why CVV works well in CCA regardlessofofthe
      as  gemicitabine   and   cisplatin.  The   reason  why   CVV     works   well in  CCA    regardless      the
resistance
 resistancetoto gemicitabine
                gemicitabine or cisplatin isis because
                                                becauseCVV
                                                         CVVtakes
                                                               takescancer
                                                                      cancerselective
                                                                              selectiveinfection/replication
                                                                                         infection/replication
                                                                                                             asas
                                                                                                                its
its cancer
 cancer      killing
         killing      mechanism,
                  mechanism,   whichwhich     is different
                                       is different         from
                                                     from that     that of conventional
                                                                of conventional   anti-canceranti-cancer   drugs.
                                                                                                drugs. Therefore,
Therefore,   CVVininfection
 CVV infection                in CCA
                      CCA cells          cells may
                                  may enhance      theenhance
                                                       efficacythe   efficacy of chemotherapeutic
                                                                 of chemotherapeutic                   agents by
                                                                                          agents by overcoming
overcoming     the drug-resistance.
 the drug-resistance.

     Figure
      Figure3.3.Oncolytic
                 Oncolyticactivity
                             activityofofthe
                                          theCVV
                                              CVVandanditsitscombinations
                                                              combinationswith
                                                                             withcisplatin
                                                                                  cisplatinand
                                                                                             andgemcitabine.
                                                                                                  gemcitabine.(a) (a)The
                                                                                                                      The
     viability (%)  of  four different    CCA  cell lines   against the  CVV   and   WT   at different  MOIs.
      viability (%) of four different CCA cell lines against the CVV and WT at different MOIs. (b) The viability(b)  The
     viability  (%)
      (%) of four    of four
                  different  CCAdifferent
                                  cell linesCCA    cellcisplatin
                                             against      lines against   cisplatinatand
                                                                 and gemcitabine           gemcitabine
                                                                                      different            at different
                                                                                                concentrations.   (c) The
     concentrations.
      combination of (c)CVVThe+ cisplatin/CVV
                                 combination of  + gemcitabine
                                                    CVV + cisplatin/CVV        + in
                                                                   viability (%) gemcitabine     viability
                                                                                    four different         (%)lines.
                                                                                                    CCA cell    in four
     different CCA cell lines.
 2.4. High Expression of Stemness Markers in CCA Cell Lines
2.4. High
      TheExpression
          difficulty of
                     ofStemness
                        optimal Markers  in CCA Cell Lines
                                clinical management    of CCA is mainly due to its clinical complexity
 contributed    by itsofmultiple
      The difficulty      optimalcell    origins,
                                     clinical       stemness of
                                               management         features,
                                                                     CCA is and    biliary
                                                                              mainly   due tumor    microenvironment
                                                                                            to its clinical complexity
 (TME)   [19].  To evaluate   the   stemness     of CCA    cell  lines, mRNA      expressions
contributed by its multiple cell origins, stemness features, and biliary tumor microenvironment of Nanog,    Sox2,  Oct4,
                                                                                                                 (TME)
 andTo
[19].  c-Myc   werethe
         evaluate    analyzed
                        stemness  inofthe
                                        CCAHuCCT1      andmRNA
                                              cell lines,   SNU1196      cell lines.
                                                                     expressions       Cells were
                                                                                   of Nanog,   Sox2,harvested
                                                                                                       Oct4, andatc-Myc
                                                                                                                    three
 different  time intervals (24, 48,  and  72  h) for mRNA     expression    analysis.  HuCCT1
were analyzed in the HuCCT1 and SNU1196 cell lines. Cells were harvested at three different time  cells cultured for 72 h
 showed    the upregulation    of all  four genes   (Figure  4a).   Nanog   and  c-Myc   expression
intervals (24, 48, and 72 h) for mRNA expression analysis. HuCCT1 cells cultured for 72 h showed      were  upregulated
 after
the    72 h in SNU1196
     upregulation   of all cells,  whereas
                           four genes        Sox2 4a).
                                          (Figure   and Nanog
                                                         Oct4 genes and were
                                                                        c-Mycupregulated
                                                                                 expression in   cells
                                                                                              were     cultured forafter
                                                                                                     upregulated     48 h
 (Figure  4b). mRNA    expression     of stemness    markers    confirmed    the stemness   characteristics
72 h in SNU1196 cells, whereas Sox2 and Oct4 genes were upregulated in cells cultured for 48 h (Figure       of CCA   cell
 lines,
4b).    whichexpression
     mRNA      may contribute      to drug
                           of stemness       resistance
                                           markers        [15]. the stemness characteristics of CCA cell lines,
                                                      confirmed
which may contribute to drug resistance [15].
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       Figure 4.4. Expression
                    Expressionofofstemness
                                     stemness   markers
                                             markers       in CCA
                                                       in CCA          cell lines.
                                                                cell lines.  HuCCT1HuCCT1      and SNU1196
                                                                                       and SNU1196    cells werecells were
                                                                                                                  cultured
     Figure 4. Expression of stemness markers in CCA cell lines. HuCCT1 and SNU1196 cells were
       cultured  inplates.
       in six-well   six-well  plates.
                             Cells wereCells were harvested
                                         harvested   and total and
                                                                RNAtotalwasRNA     was extracted
                                                                              extracted           at three time
                                                                                        at three different  different time
                                                                                                                 intervals:
     cultured in six-well plates. Cells were harvested and total RNA was extracted at three different time
       intervals:
       24, 48, and24,
                    72 48,  and 72 h. Complementary
                        h. Complementary     DNA (cDNA)   DNA    (cDNA)
                                                             synthesis      synthesis
                                                                          was          wasfrom
                                                                                performed    performed   from
                                                                                                 total RNA   andtotal
                                                                                                                  usedRNA
                                                                                                                        for
     intervals: 24, 48, and 72 h. Complementary DNA (cDNA) synthesis was performed from total RNA
       and  used   for real-time qPCR    expression   analysis. (a) mRNA       expression of  stemness
       real-time qPCR expression analysis. (a) mRNA expression of stemness markers (Nanog, Sox2, Oct4,  markers   (Nanog,
     and used for real-time qPCR expression analysis. (a) mRNA expression of stemness markers (Nanog,
       Sox2,  Oct4, and
       and c-Myc)          c-Myc) in
                     in HuCCT1        HuCCT1
                                   cells and (b)cells and (b) in
                                                 in SNU1196       SNU1196 cells.
                                                                cells.
     Sox2, Oct4, and c-Myc) in HuCCT1 cells and (b) in SNU1196 cells.
  2.5. The
  2.5.  The Effect
            Effect of
                   of pH
                      pH onon CCA
                               CCA Cell
                                      Cell Lines
                                           Lines
2.5. The Effect of pH on CCA Cell Lines
         To evaluate
         To evaluatethe theeffect
                             effectofofpHpH ononCCA
                                                  CCAcells, thethe
                                                        cells,   HuCCT1,
                                                                    HuCCT1,SNU245,
                                                                               SNU245,and and
                                                                                           SNU478    cell lines
                                                                                                 SNU478          were were
                                                                                                            cell lines used.
  Cell To  evaluate
        culture  mediathewith
                            effectthe
                                    ofappropriate
                                        pH on CCApH    cells, the HuCCT1,
                                                          values   were used SNU245,
                                                                              for cell  and SNU478
                                                                                       culture.   To      cellan
                                                                                                     create    lines  were
                                                                                                                  acidic pH,
  used. Cell culture media with the appropriate pH values were used for cell culture. To create an acidic
used.
 1pH,   Cell
    N HCl    culture
             was used; media    with
                          to create    the appropriate
                                      an alkaline         pH
                                                   pH, 1 pH,   values
                                                          N NaOH      were  used
                                                                      was used.   for cell
                                                                                The cells  culture.  To  create  an  acidic
        1 N HCl    was used;     to create   an alkaline        1 N NaOH    was used.   Thewere
                                                                                             cellsstable
                                                                                                    were in   media
                                                                                                           stable     with a
                                                                                                                   in media
pH,
  pH 1ranging
        N HCl wasfrom  used;
                         7 to 9to(Figure
                                   create an
                                           5). alkaline
                                               The      pH, 1and
                                                    survival    N NaOH
                                                                    spreadwas
                                                                           of  used.cell
                                                                              CCA      Thelines
                                                                                            cellsatwere
                                                                                                    pH  stable
                                                                                                        7–9      in media
                                                                                                             indicated   the
  with a pH ranging from 7 to 9 (Figure 5). The survival and spread of CCA cell lines at pH 7–9
with    a pHnature
  alkaline     rangingof   fromcells
                         these     7 toand
                                         9 (Figure
                                             their   5). The survival and spread of CCA cell lines at pH 7–9
                                                   environments.
  indicated the alkaline nature of these cells and their environments.
indicated the alkaline nature of these cells and their environments.

       Figure 5. The effect of pH on CCA cells. The pH of the medium was adjusted using HCl and NaOH.
     Figure  5.5.The
                  Theeffect  of pH  ononCCA  cells. The pH ofof
                                                              the medium   was adjusted using HCl  and NaOH.
       Figure
       The  images   ofeffect
                        cells of
                               in pH     CCA
                                  different pHcells.
                                                mediaThe pH
                                                        were    the medium
                                                             captured after was
                                                                            24 h adjusted
                                                                                  under anusing HCl
                                                                                            inverted and NaOH.
                                                                                                     microscope
     The  images    of cells in different pH   media  were captured  after 24 h under  an inverted microscope
       The images of cells in different pH media were captured after 24 h under an inverted microscope (scale
       (scale bar = 100 µm).
     (scale
       bar =bar
              100= µm).
                   100 µm).

  2.6. Alkaline
  2.6.Alkaline   pH
        AlkalinepH   Favors
                 pHFavors   CVV
                     FavorsCVV
                            CVV  Infection
                                  Infection  in the  CCA Cell  Line
2.6.                            Infection  inin
                                              thethe CCA
                                                   CCA    Cell
                                                        Cell   Line
                                                             Line
        To  assess
        Toassess   the
            assessthe  oncolytic
                   theoncolytic   efficacy
                       oncolyticefficacy     of
                                  efficacyofofthethe
                                                theCVVCVV under
                                                     CVVunder
                                                          underan an alkaline
                                                                  an  alkaline pH,
                                                                               pH, HuCCT1
                                                                                    HuCCT1was was  cultured
                                                                                                   culturedatat
                                                                                              wascultured       four
                                                                                                             atfour
                                                                                                                 four
       To                                                           alkaline pH,   HuCCT1
  pH   conditions
 pHconditions       ranging
       conditionsranging     from
                    rangingfrom
                             from6.56.5  to 8.0.
                                    6.5toto8.0.   The
                                            8.0.The    CVV
                                                  TheCVV
                                                       CVVwaswas  then
                                                             wasthen    infected
                                                                  theninfected    (0.1
                                                                        infected(0.1   MOI),
                                                                                  (0.1MOI),   GFP
                                                                                       MOI),GFP    expression
                                                                                              GFPexpression
                                                                                                   expressionwas was
                                                                                                                 was
pH
  captured,
  captured, andand   cells
              and cells    were   harvested      for  qPCR   GFP    expression.  Green    fluorescence  expression
captured,          cells were
                          wereharvested
                                harvested  for for
                                                qPCR   GFP GFP
                                                     qPCR  expression.   Green Green
                                                                  expression.   fluorescence  expression
                                                                                        fluorescence      indicated
                                                                                                       expression
  indicated robust infectivity of the CVV at alkaline pH values of 7.5 and 8.0 (Figure 6a, top). qPCR
indicated robust infectivity of the CVV at alkaline pH values of 7.5 and 8.0 (Figure 6a, top). qPCR
  GFP expression was the highest at pH 7.5 (Figure 6a, bottom). These in vitro results support the robust
GFP expression was the highest at pH 7.5 (Figure 6a, bottom). These in vitro results support the robust
Cancers 2019, 11, 1667                                                                                                            6 of 11

robust infectivity of the CVV at alkaline pH values of 7.5 and 8.0 (Figure 6a, top). qPCR GFP expression
Cancers 2019, 11, x FOR PEER REVIEW                                                                                     6 of 11
was the highest at pH 7.5 (Figure 6a, bottom). These in vitro results support the robust infectivity of the
CVV    underofan
infectivity       thealkaline
                       CVV underpH. Replication      efficacy
                                       an alkaline pH.          in SNU1196
                                                          Replication           in in
                                                                         efficacy  different
                                                                                      SNU1196  pHinmedia     (6.5,pH
                                                                                                      different    7, 7.5,
                                                                                                                       mediaand 8)
shows
(6.5, 7, 7.5, and 8) shows its preference to a slightly alkaline environment (pH 7.5–8) (Figure 6b), which cell
         its preference     to a  slightly  alkaline   environment      (pH   7.5–8)  (Figure   6b), which    corresponds
toxicity
corresponds(decrease     of absorbance)
                 cell toxicity  (decrease of  at absorbance)
                                                 respective pH      media (Figure
                                                               at respective   pH media6c). (Figure
                                                                                             The differences     in replication
                                                                                                      6c). The differences
efficacy   and cytotoxicity
in replication     efficacy andin     SNU1196 were
                                   cytotoxicity          not significant
                                                   in SNU1196                   > 0.05), which
                                                                   were not(psignificant           is perhaps
                                                                                            (p > 0.05),  which isbecause
                                                                                                                    perhaps   CCA
is already     an  alkaline    cancer.    When      we  used   HeLa    (extracellular     pH   of
because CCA is already an alkaline cancer. When we used HeLa (extracellular pH of most cancer is   most   cancer    is generally
considered      to be mildly
generally considered        to beacidic
                                   mildlyin acidic
                                             the rage  of 6.4–7.0)
                                                    in the           [20], the[20],
                                                            rage of 6.4–7.0)    highest   replication
                                                                                     the highest         efficacyefficacy
                                                                                                   replication      of CVV   ofwas
found
CVV was  in pH    7.5 (*
              found        < 0.05,
                       inppH    7.5 (*Figure   S1).Figure
                                        p < 0.05,   From theS1).results,
                                                                  From theweresults,
                                                                               proposewe  that  the oncolytic
                                                                                             propose    that theactivity
                                                                                                                   oncolytic of the
activity
CVV        of the and
       is stable     CVVhighly
                            is stable    and highly
                                    effective           effective
                                                at infecting        at infecting
                                                               cancer   cells in acancer
                                                                                    slightly cells in a slightly
                                                                                               alkaline              alkaline
                                                                                                          microenvironment
microenvironment
(pH   7–8), suggesting   (pH   7–8),
                             that  CVV suggesting
                                          is highlythat   CVV for
                                                      suitable   is highly  suitable for
                                                                     the treatment         the treatment of CCA.
                                                                                       of CCA.

      Figure 6.
      Figure         CVVinfectivity
                 6. CVV      infectivityininCCA.
                                              CCA.(a)(a)Green
                                                          Green  fluorescence
                                                              fluorescence       expressions
                                                                              expressions       in SNU245
                                                                                            in SNU245        at different
                                                                                                         at different  pHspHs
      (top),  48    h  after CVV   infection.     GFP   gene expression    from  cells cultured   in different
      (top), 48 h after CVV infection. GFP gene expression from cells cultured in different pHs of media        pHs  of  media
      (bottom) (scale
                   (scalebar
                           bar200   um);* *p p< <
                                200um);           0.05,
                                                0.05,   one-way
                                                      one-way     ANOVA.
                                                               ANOVA.     (b)(b) Replication
                                                                              Replication      efficacy
                                                                                           efficacy     in SNU1196
                                                                                                    in SNU1196        cultured
                                                                                                                  cultured
         different pHs
      in different     pHsof ofmedia.
                                media.(c)(c)WST-1
                                             WST-1    assay
                                                    assay   results
                                                          results of of SNU1196
                                                                     SNU1196       cells
                                                                               cells     cultured
                                                                                     cultured      in different
                                                                                               in different pHspHs    of media.
                                                                                                                 of media.
      N.S., ** pp >>0.05,
                      0.05,one-way
                            one-wayANOVA.
                                       ANOVA.

2.7. TherapeuticEfficacy
2.7. Therapeutic EfficacyofofCVV
                              CVVininthe
                                       theXenograft
                                           Xenograft Model
                                                    Model
      To prove
      To prove thethe oncolytic
                        oncolyticefficacy
                                      efficacyofofthe
                                                    theCVV
                                                         CVVininCCA  CCA inin   vivo,
                                                                            vivo,   thethe    SNU1196
                                                                                          SNU1196             xenograft
                                                                                                          xenograft    modelmodelwaswas
used.  SNU1196 cellscells(2         7
                          (2××1010) were
                                      ) were   injected   subcutaneously       into
used. SNU1196                     7          injected  subcutaneously      into   thethe
                                                                                       leftleft
                                                                                            flankflank    of nude
                                                                                                     of nude         mice.
                                                                                                                 mice.  Mice  Mice
                                                                                                                                werewere
categorized    intofive
categorized into      fivegroups
                            groups(PBS, (PBS,cisplatin,
                                                cisplatin,gemcitabine,
                                                             gemcitabine,  WT,WT, and and   CVV),
                                                                                         CVV),      withwith
                                                                                                           fivefive
                                                                                                                  micemice
                                                                                                                         per per
                                                                                                                               groupgroup
and were treated
            treated asas per
                          per Section
                               Section2.6. 2.6.After
                                                 Afterthe
                                                        thetumor
                                                             tumorvolume
                                                                      volume     reached     300    mm    3 , 100 µL of PBS, 1 ×6 106
                                                                             reached 300 mm , 100 µL of PBS, 1 × 10
                                                                                                      3

plaque-forming
plaque-forming units unitsofofthetheCVV CVVororWT,  WT,andand2525mg/kg
                                                                    mg/kg  ofof   cisplatin
                                                                               cisplatin    or or    gemcitabine
                                                                                                 gemcitabine        werewere     injected
                                                                                                                            injected
intratumorally
intratumorally to   to the
                        the corresponding
                             correspondingmice     micegroups
                                                           groupsonceonceperperweek.
                                                                                   week.The   The    tumor
                                                                                                 tumor          volume
                                                                                                            volume     (mm  (mm    3 ) was
                                                                                                                              3) was

             twice per
measured twice       per week
                          weekusing
                                  usingthe  theformula:
                                                 formula:LL××W2/2,W2/2,where
                                                                          whereLLisisthe  the   tumor
                                                                                             tumor         length
                                                                                                        length    andand
                                                                                                                       WW      is the
                                                                                                                           is the   tumor
tumor A
width.   width.
           slower A tumor
                      slowerburden
                                tumor was  burden    was observed
                                                 observed                in CVV-treated
                                                              in CVV-treated       mice thanmice                        mice (p < 0.05,
                                                                                                          than in PBS-treated
                                                                                                   in PBS-treated
mice (p7a).
Figure    < 0.05,  Figure 7a). Gemcitabine
               Gemcitabine         may work more    may work
                                                           rapidlymore   rapidly (approximately
                                                                      (approximately          up to 10 up     daysto after
                                                                                                                     10 days    after
                                                                                                                             treatment),
treatment),   but  surviving,    drug-resistant      stem    cells like CCA     started    to  grow
but surviving, drug-resistant stem cells like CCA started to grow after that. In addition, regression ofafter   that. In  addition,
regression
tumor   burdenof was
                  tumor     burdenonly
                        observed        wasinobserved       onlyand
                                                the viral (WT      in CVV)
                                                                       the viral     (WT and
                                                                              treatment      group.  CVV)      treatment total
                                                                                                         Additionally,        group.
                                                                                                                                   cancer
Additionally,   total   cancer  cell   lysis  was  easily  found   within  the   tumor    mass
cell lysis was easily found within the tumor mass only in the viral treatment groups. As expected, only   in  the  viral treatment
groups.
the      As efficacy
    highest   expected,    thefound
                         was    highest     efficacy
                                         in the  CVVwasgroupfound   in the
                                                                (tumor      CVV
                                                                         size:  PBS group    (tumor>size:
                                                                                      > cisplatin                PBS > cisplatin
                                                                                                          gemcitabin      > WT > >CVV
gemcitabin    > WT     > CVV    group).     Hematoxylin       and  eosin  (H&E)     staining
group). Hematoxylin and eosin (H&E) staining results of tumor mass and terminal deoxynucleotidyl  results    of  tumor   mass     and
terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) staining results of tumor
transferase dUTP nick end labeling (TUNEL) staining results of tumor mass of each group indicated
mass of each group indicated that CVV most effectively induced apoptosis in the tumor mass (Figure
that CVV most effectively induced apoptosis in the tumor mass (Figure 7b). This result confirmed the
7b). This result confirmed the therapeutic efficacy of the CVV in the CCA xenograft model.
therapeutic efficacy of the CVV in the CCA xenograft model.
Cancers 2019, 11, 1667                                                                                                              7 of 11
Cancers 2019, 11, x FOR PEER REVIEW                                                                                                 7 of 11

      Figure
      Figure 7.7. Therapeutic
                   Therapeutic efficacy
                                    efficacy of
                                              of the
                                                 the CVV
                                                       CVV in in the
                                                                 the SNU1196
                                                                      SNU1196 xenograft
                                                                                   xenograft model.
                                                                                               model. (a)
                                                                                                        (a) Tumor
                                                                                                              Tumor size
                                                                                                                      size measured
                                                                                                                           measured
      in
      in xenograft
         xenograft models
                       models treated
                                  treated with
                                           with PBS,
                                                  PBS, cisplatin,
                                                         cisplatin, gemcitabine,
                                                                     gemcitabine, and and WTWT oror CVV.
                                                                                                    CVV. SNU1196
                                                                                                           SNU1196 tumors
                                                                                                                        tumors were
                                                                                                                                 were
      induced     in   nude   mice.    When     the   tumor     volume     reached     300
                                                                                        3    mm  3, treatment was started. The
      induced in nude mice. When the tumor volume reached 300 mm , treatment was started. The treatment
      treatment
      scheduled scheduled
                     days are noted days with
                                          are noted      with downwards
                                                 downwards         arrows. Tumor arrows.   Tumorinvolume
                                                                                        volume        nude mice in nude
                                                                                                                     after mice  after
                                                                                                                           treatment
      treatment
      (left). Tumor (left).  Tumor
                         volume    aftervolume
                                         treatment after   treatment
                                                       (left). Image of  (left).  Imagetumors
                                                                            SNU1196       of SNU1196
                                                                                                 4 weekstumors        4 weeks(right).
                                                                                                             after treatment     after
      treatment
      One-paired(right).      One-paired
                      t-test were              t-test the
                                     used to detect    were    used to detect
                                                            significance   in tumorthe volume
                                                                                       significance
                                                                                                growth in (* p < 0.05)
                                                                                                          tumor     volume    growth
                                                                                                                        and one-way
      (* p < 0.05)
      ANOVA      testand   one-way
                       shows           ANOVA
                                that tumor   volumetestatshows
                                                           day 27that
                                                                    are tumor     volume
                                                                        significantly       at daybetween
                                                                                        different   27 are significantly
Cancers 2019, 11, 1667                                                                                8 of 11

(Figure 3a–c). The therapeutic efficacy of the CVV against stem cell-like colon cancer was proven
in a previous study [15]. To prove the therapeutic efficacy of the CVV against stem cell-like CCA
tumors, upregulated mRNA expressions of stemness markers, such as Nanog, Sox2, Oct4, and c-Myc,
were shown in the HuCCT1 and SNU1196 cell lines (Figure 4a); hence, we used SNU1196 to evaluate
the therapeutic efficacy of the CVV in the xenograft model. We considered the alkaline environment of
CCA tumors in the bile duct to check whether extracellular pH modulation, in addition to enhanced
cancer selectivity of CVV, would be able to overcome the drug-resistance and complexity of the TME,
would enhance the therapeutic activity of CVV on these refractory cancers. Three different CCA cell
lines were cultured in media with four different pH values, and the normal proliferation of HuCCT1
cells in a slightly alkaline pH environment was observed (Figure 5). GFP expression of the CVV in
terms of green fluorescence and mRNA expression in HuCCT1 cells confirmed the replication and
oncolytic efficacy of the CVV in SNU1196 were highest at pH 7.5 (Figure 6). These results support
that the oncolytic efficacy of the CVV on CCA cell lines is enhanced with the alkaline pH in vitro.
In the xenograft model, the slower growth and total lysis (apoptosis) within SNU1196 tumor mass in
CVV-treated nude mice indicated the therapeutic efficacy of the CVV against CCA tumors (Figure 7).
      It is widely accepted that the extracellular pH (pHe ) of cancer cells is more acidic than normal cells
and the intracellular pH (pHi ) of them is neutral or even more alkaline than that in normal. Recently,
some suggested that an approach to manipulating pHe could be achieved by the targeted delivery of
alkaline nanoparticles to the tumor tissue as a future clinical application [26]. As an aspect of the impact
of TME and stem-like plasticity in CCA, this pHe modulation approach in conjunction with CVV is
likely to be very effective in cancer therapy. This application is very applicable for other cancer cell
types as well. The promise of this therapeutic potential will be confirmed with a clinical assessment of
its efficacy and safety in further studies. Before the clinical evaluation, therapeutic efficacy tests of CVV
in syngeneic and orthotopic animal models should be considered. In clinical studies, administration
of the virus, how to modulate pHe in surrounding cancer tissue, and optimization in corresponding
cancer types should be also considered.

4. Materials and Methods

4.1. Cell Culture and Virus
      Human CCA cell lines (HuCCT1, SNU245, SNU478, and SNU1196) were obtained from a
Korean cell line bank (KCLRF, Seoul, South Korea). All cell culture media and their related reagents
were obtained from Welgene (Gyeongsan, South Korea). These cells were thawed and cultured
in Roswell Park Memorial Institute (RPMI) 1640 medium (10% fetal bovine serum (FBS) and 1%
penicillin/streptomycin(P/S)) in the presence of 5% CO2 at 37 ◦ C in an incubator. For HeLa and HT29
cells, they were thawed and cultured in Dulbecco Modified Eagle medium (DMEM) (10% FBS and 1%
P/S). Cells were subcultured when they achieved 70% confluence. The CVV was engineered as per
Figure 1a. Phase-contrast images of the cells were taken by a microscope (EVOS Cell Imaging Systems,
Thermo Fisher Scientific, Waltham, MA, USA).

4.2. Replication Efficacy Assay
      To assess the replication efficacy of the CVV in CCA (HuCCT1 and SNU1196), 2 × 105 cells per
well were seeded in six-well plates. After 90% confluence, 0.1 MOI of the CVV was used to infect
cells. Cells were harvested after 72 h and frozen at −80 ◦ C for virus titration. For virus titration,
2 × 105 U2OS (ATCC®HTB-96™, Manassas, VA, USA) cells per well were seeded in six-well plates.
Harvested CVV-infected cell lysate was used to infect U2OS cells by serial dilution. At 72 h post
infection, cells were stained with 0.1% crystal violet solution. After 2–4 h, destaining was performed
and the plates were dried to count the plaques.
Cancers 2019, 11, 1667                                                                                 9 of 11

4.3. WST-1 Assay
      The WST-1 assay was used to evaluate the cellular toxicity of the CVV in various CCA cell lines.
First, 1 × 104 cells per well were seeded in 96-well plates. After 24 h, chemotherapeutic drugs or the
CVV were used to infect cells at different concentrations (0.1, 1.0, 10, 100, and 1000 µM, and 0.01, 0.1,
1.0, 10, and 100 MOI, respectively) in serum-free media. Serum-free media were replaced with normal
media after 2 h. At 72 h post infection, cells were analyzed using the WST-1 assay (EzCytotox, ITSBIO,
Seoul, Korea). As per the manufacturer’s instructions, absorbance was measured at 450 and 680 nm
(reference wavelengths).

4.4. Cells Culturing in pH-Adjusted Media
     To adjust pH of the media, 1N NaoH or 1 N HCl was used. HuCCT1, SNU245, SNU245,
and SNU1196 cells were seeded in six-well plates. After 24 h of seeding, the normal media (RPMI1640,
10%FBS, 1%P/S) was replaced with corresponding pH-adjusted media (RPMI1640; no FBS; pH: 2.0,
5.0, 6.0, 6.5, 7.0, 7.5, 8.0, 9.0, and 11.0). Cells were kept in 2 h in pH-adjusted media. After this,
pH-adjusted media was replaced with normal media. The proliferation of cells was noted after 24 h
using inverted microscope.

4.5. Real-Time PCR Assay
      Total RNA was extracted from cell lines using Trizol reagent (Thermo Fisher Scientific Korea,
Seoul, South Korea). To confirm RNA purity, absorbance was measured at 260 and 280 nm. For cDNA
synthesis, 2 µg total RNA was used with the PrimeScript 1st Strand cDNA Synthesis Kit (Takara Korea,
Seoul, Korea). For the real-time polymerase chain reaction (PCR), 1 µg cDNA was used with the
SYBR-Green quantitative PCR (qPCR) mixture (Roche, Basel, Switzerland) reagent. A LightCycler 96
Real-Time PCR System (Roche) was used to perform the real-time PCR assay. The program consisted
of a 40-cycle amplification at 95 ◦ C for 20 s, 60 ◦ C for 20 s, and 72 ◦ C for 25 s. β-actin mRNA expression
was used to normalize the expression of the selected genes using the 2−∆∆Ct method.

4.6. Animal Study
     All animal experiments were approved by the Institutional Animal Care and Use Committee of
Pusan National University (PNU-2017-1533). Nude mice were purchased from Orient (Gapyeong,
South Korea). SNU1196 (2 × 107 cells/100 µL) was injected subcutaneously into the left flank of nude
mice. Mice were divided into five groups; namely, PBS, cisplatin, gemcitabine, WT, and CVV, with five
mice per group. The tumor volume (mm3 ) was measured twice per week using the formula: L × W2/2,
where L is the tumor length and W is the tumor width. After the tumor volume reached 300 mm3 ,
100 µL of PBS, 1 × 106 plaque-forming units of the CVV or WT, cisplatin (25 mg/kg, Selleckchem,
Houston, TX, USA), and gemcitabine (Merck, Darmstadt, Germany) were injected intratumorally to
the corresponding mice groups once per week. We used 106 plaque-forming units (pfu) virus/mouse
because CVVs have a high replication rate [15,16] and the infectious dose of the WT or JX594 viruses
used in a previous in vivo study was more than 107 pfu [27]. After four weeks of injection, mice were
euthanized and the tumors were harvested for imaging. For the bio-distribution of viruses, organs and
tumors were collected from HT29-xenograft nude mice, which received 1 × 106 plaque-forming units
of the CVV or WT intraperitoneally and were sacrificed after 2 weeks.

4.7. H&E staining and TUNEL Assay
     To assay tomor generation and morphological characterics, H&E staining and TUNEL assays were
performed on paraffin-embedded tumor sections. Images were acquired using EVOS Cell Imaging
Systems (Thermo Fisher Scientific).
Cancers 2019, 11, 1667                                                                                          10 of 11

4.8. Statistical Analysis
    Student’s unpaired t-tests were used to analyze the statistical significance of the SNU1196 tumor
volumes in nude mice. The level of statistical significance was set at p < 0.05.

5. Conclusions
      In conclusion, the CCA cell lines and xenograft-based results demonstrated the oncolytic efficacy
of the CVV and confirmed its therapeutic efficacy in different circumstances in relation to the stem
cell-like characteristics and the alkaline nature of CCA tumors. The findings of this study support the
fact that CVV-based virotherapy is also suitable for the treatment of drug-resistant CCA.

Supplementary Materials: The following are available online at http://www.mdpi.com/2072-6694/11/11/1667/s1,
Figure S1: Replication efficacy in HeLa cultured in different pHs of media. * p < 0.05, one-way ANOVA.
Author Contributions: Conceptualization, methodology, and investigation, S.Y.Y., N.B., and H.L.L.; resources,
S.Y.Y. and D.-H.K.; writing the manuscript: S.Y.Y. and N.B.; project administration, S.Y.Y.; funding acquisition,
S.Y.Y. and J.H.
Funding: This research was supported by the Basic Science Research Program through the National Research
Foundation of Korea (NRF) funded by the Ministry of Education (grant numbers NRF-2016R1D1A1B03935221,
NRF-2017R1C1B5015034, and NRF-2018R1D1A1B07050358).
Conflicts of Interest: The authors declare no conflict of interest.

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