41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery

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41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
41st Annual J.P. Morgan
  Healthcare Conference
                    January 9, 2023    Transforming Lives Through
                                                Genetic Discovery
                      J.J. Bienaimé
Chairman and Chief Executive Officer
41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
This non-confidential presentation contains “forward-looking statements” about the business prospects of BioMarin Pharmaceutical
    Inc. (BioMarin), including, without limitation, statements about: the expected financial performance of BioMarin, including, without
    limitation, preliminary unaudited total revenues and revenue from sales of VOXZOGO for fiscal year 2022, double-digit revenue
    growth in 2023, sustainable growth and profitability, profit margin expansion, mid-decade revenues, and other specified financial
    guidance; the markets for BioMarin’s products and product candidates, including, without limitation, the addressable patient
    populations in BioMarin territories and commercial market opportunities; and BioMarin’s development of product candidates and
    commercialization of products, including, without limitation, IND submissions anticipated in 2023, the outcome of BioMarin's BLA
    resubmission for ROCTAVIAN to the FDA, and the commercial launch of ROCTAVIAN. These forward-looking statements are
    predictions and involve risks and uncertainties such that actual results may differ materially from these statements. These risks and
    uncertainties include, among others: completion of BioMarin’s normal quarter and year-end accounting procedures for the quarter
    and the year ended December 31, 2022 and completion of the external audit with respect to such periods by BioMarin’s independent
    registered public accounting firm; results and timing of current and planned preclinical studies and clinical trials; BioMarin’s ability to
    successfully manufacture its commercial products and product candidates; the content and timing of decisions by the FDA, the
    European Commission and other regulatory authorities concerning products and product candidates; BioMarin’s success in the
    commercialization of its commercial products; and those factors detailed in the press release issued January 8, 2023, as well as
    BioMarin’s filings with the Securities and Exchange Commission, including, without limitation, the factors contained under the caption
    “Risk Factors” in BioMarin’s Quarterly Report on Form 10-Q for the quarter ended September 30, 2022 as such factors may be
    updated by any subsequent reports. Investors are urged not to place undue reliance on forward-looking statements, which speak
    only as of the date hereof. BioMarin is under no obligation, and expressly disclaims any obligation to update or alter any forward-
    looking statement, whether as a result of new information, future events or otherwise.

2
41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
Scientific Breakthroughs are Foundational
to Our Performance
41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
Solid,  Profitable,
End to End           “IRA-proof” & Growing Base Business
           Business Partnership
Transform
▪ Anchoredpartnership  to business
               by durable          mindsettherapies
                          enzyme-based      with    producing nearly $2B of revenue
finance acumen
    and positive cash flows. Steady revenue growth across the portfolio
▪ High barriers to entry results in lower risk of competition and long-lived revenue
  streams

New Large-market Launches Are Significant Near-Term Growth Drivers
▪ VOXZOGO® as first treatment for Achondroplasia – BioMarin’s strongest global launch to date
▪ ROCTAVIAN™ poised to revolutionize treatment for Severe Hemophilia A with First Gene
  Therapy to launch in a large, chronically managed population with unmet medical needs
▪ Profit margin expansion expected as new product revenue growth leverages world class
  infrastructure

Best-In-Class Innovation Capabilities
▪       Industry-leading R&D teams produced suite of eight internally-developed genetic-based commercial therapies
▪       Fully-integrated and scaled biopharma capabilities: Discovery, Clinical, Regulatory and world-class Manufacturing
▪       Leveraging decades of genetic expertise in current age of rapid genetic disease discovery
▪       Exceptional development success rate applied to deep early-stage pipeline with most assets in Company history
    4
41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
$ Millions
    Reported Revenue                                Revenue Growth                                    Operating Margin
                                                                                                                                                       GAAP Net Income1
        Growth                                      Excluding Kuvan®                                    Expansion1

                        $1,559                                                                                             11.2%
    $1,396                                                              $1,385
                                                                                                                                                                       $142
                                                    $1,179

              +12%                                            +17%                                        +12.3 ppts                                          +$148M

                                                                                                     (1.2%)                                               ($6)
Q3 YTD 2021         Q3 YTD 2022                Q3 YTD 2021           Q3 YTD 2022                 Q3 YTD 2021            Q3 YTD 2022                 Q3 YTD 2021   Q3 YTD 2022

     1 Operating  Margin Expansion and GAAP net income in 2022 includes $108M one-time pretax benefit from sale of priority review voucher (PRV);
5
     “YTD” in all instances denotes results through Q3
41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
VOXZOGO &
                                                                               ROCTAVIAN

                                      >2x              $4B - $5B
                                                                                            New                       Base
                                                                                          Products   $4B-$5B        Products
                                                                                            ~50%      Mid-Decade      ~50%
          $1.85B $2.09B

             2021          20221                          Mid-     End of
                                                         Decade    Decade                                               All other
                                                                                                                        products
                                                          Anticipated Revenue Growth Enablers

Continued growth within                            Base indication launch of   Regulatory approval of U.S.   Expansion of VOXZOGO &
     base portfolio                                VOXZOGO & ROCTAVIAN                ROCTAVIAN               ROCTAVIAN indications

 6   1   Unaudited preliminary 2022 revenue estimate
41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
Maximize Base                         Aggressive Life
    Indication Revenue                     Cycle Management

                          Sustainable
                           Growth &
                          Profitability
    Accelerate Clinical                   Balance Profits with
         Pipeline                           Reinvestments

7
41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
$ Millions

                                                                                                CAGR1
                     +14%      CAGR1                                        Product    2021
                                                  $1,492                                        2018-21
                                      $1,347
                                                                   VIMIZIM®            $623      +9%
                      $1,175
    $1,015                                                         NAGLAZYME®          $380      +3%

                                                                   PALYNZIQ®           $237     +169%

                                                                   BRINEURA®           $128      +48%

                                                                   ALDURAZYME®         $123      (3%)

                                                                   Core Products       $1,492   +14%
         2018           2019            2020       2021    2022E   (excluding Kuvan)

                              Core Product Revenue
                              (excluding Kuvan)

8   1   Compounded annual growth rate 2018-21
41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
1,000+ Additional Children Eligible for Treatment upon Anticipated U.S. and E.U. Age Expansions

        VOXZOGO Achondroplasia Market Opportunity                                                   Launch Excellence
                                                                                            2022 Commercial Execution
                                                                                $3B+        • 1 year anniversary
                                                                               Annual
                                                      800    18,000+           Market       • Over 1,000 children treated at
         ~17,000                300                                          Opportunity      year-end
                                                                                            • 32 active markets to date
         Approved
        age ranges:                                                                         • $169M1 expected 2022 revenue
    •    U.S. 5+                                                                            2023 Opportunities
    •    Japan all
    •    EMA 2+                                                                             • Continued uptake of patients, and
    •    ROW 2+                                                                               expansion into additional new
                                                                                              markets
           Initially           EMA                  U.S.   Total Potential      ACH
          Indicated          Expansion           Expansion Indicated ACH      Indicated     • Potential age label expansions in
           Patients           Age < 2             Age < 5     Patients       Market Value     the U.S. and Europe
(Approximately 1,000 newborns with achondroplasia born each year in BioMarin territories)

9   1   Unaudited preliminary 2022 revenue estimate
41st Annual J.P. Morgan Healthcare Conference - January 9, 2023 Transforming Lives Through Genetic Discovery
Strategic     Market
                   Hemophilia A Base Indicated1 Launch Market
                                                                                                                                   Market     Access Goal

                                                                                                                                Germany        1Q 2023
                                                                                                         $14B+
                                                        ~7,000               ~13,000                  Cumulative
                                                                                                        Market                  Italy           2H 2023
                                                                                                      Opportunity

                                                                                                                                France          2H 2023

                                   ~3,000
                                                                                                                                U.S.             2023
           ~3,000
                                                                                                                                Japan         Mid-Decade

      EMA Indicated U.S. Indicated ROW Indicated Hem A Indicated                                   Hem A Indicated
        Patients      Patients2      Patients       Patients                                        Market Value                Brazil        Mid-Decade

10   1 Indicated   defined as consistent with Phase 3 eligibility criteria 2 U.S. ROCTAVIAN indication as anticipated 1H 2023
“The impact of gene therapy on my day to
 day, it has been a life change, it has been
    a big change...The peace of mind of
living day to day, without being afraid of
  everything. That's the 3 years that I've
          had so far. A normal life.”

      “No bleeding, not even once.”

                                               ROCTAVIAN Clinical Trial Patient
Outcomes Based Agreements                                   2023
                  (OBAs)                                            Outlook

     • First OBA concluded recently representing   • First German patients expected to be
       multiple German health insurers               treated in the coming weeks
     • Additional completed OBAs in Germany        • Comfortable with ROCTAVIAN full-year
       anticipated in the coming weeks               2023 consensus estimates, assuming
                                                     March U.S. approval
     • Patient CDx testing underway to determine
       ROCTAVIAN eligibility                       • Full-year 2023 ROCTAVIAN revenue
                                                     guidance to be provided in February

12
~80% of HCPs likely to adopt ROCTAVIAN within 1 year of availability

                                                     ROCTAVIAN could capture ~35% of severe adult hemophilia A patients,
                                                     per EU HCPs

                                                     ~75% of HCPs likely to adopt ROCTAVIAN within 1 year of availability

                                                     ROCTAVIAN could capture ~40% of severe adult hemophilia A patients,
                                                     per US HCPs

     Source: BioMarin commissioned market research; Hemophilia A: Global 301 2+ Year Data Impact Assessment, EU (Germany, France, Italy) and US;
13
     April 2022
U.S. Market Access Plans Advancing:
     • ICER final assessment confirmed assumed value of ROCTAVIAN at $2.5M
     • Approached by multiple significant U.S. insurers indicating intent to implement a favorable
       policy for ROCTAVIAN reimbursement
     • U.S. outcomes-based agreements will be offered in the form of a warranty

     U.S. Regulatory Progress:
     • FDA completed the Pre-License inspection of our Gene Therapy facility in December; Believe
       the agency’s comments and observations are addressable and are preparing for launch
     • Clinical site inspections by FDA scheduled
     • 3-year Phase 3 results to be submitted to FDA in the coming weeks

14
Maximize Base                         Aggressive Life
     Indication Revenue                     Cycle Management

                           Sustainable
                            Growth &
                           Profitability
     Accelerate Clinical                   Balance Profits with
          Pipeline                           Reinvestments

15
VOXZOGO / CNP-Mechanism: Other Genetic Short Stature (GSS) Conditions
                                    600,000+
                                                                  GSS conditions currently in the clinic:
                                                                  • Hypochondroplasia
                                                                  • CNP Deficiency
                                                                  • Heterozygous NPR2 mutation
                                                                  • Rasopathy
              18,000+                                             • SHOX
            Achondroplasia           Other GSS
                                                                  • Aggrecan Deficiency
               Patients               Patients
                             (Ages 4-17 years and more than 3
                             Standard Deviations below average)

           Phase 2 Results and Next Clinical & Regulatory Steps Expected Mid-2023

16
ROCTAVIAN: Hemophilia A

                                                                                                                                  +$3B    $32B
                                                                                                          +$9B     $29B

                                                                              +$2B         $20B
                                                 +$4B          $18B
                                  $14B

                           Initial Indicated            Prior Inhibitors           Active Inhibitors                  AAV +              Age 15-17
                                                         (In the clinic)            (In the clinic)             (In the clinic)

17   1   ROCTAVIAN market represents a one-time treatment per patient and not annual re-occurring opportunity
Wholly Owned Manufacturing Capabilities Support Rapid Drug Development and Commercialization

                   Gene Therapy Facilities                                                       Biologic Facilities

     • 2017: Novato, California facility commissioned (ISPE 2018   • 1999: Novato, California facility opened   • 2011: Shanbally, Ireland facility acquired
       Facility of the Year – Project Execution)                                                                • Footprint: 200,000ft2
                                                                   • Footprint: 80,000ft2
     • Footprint: 50,000ft2 @2000L Bioreactor Scale                                                             • Manufactures: BRINEURA, VIMIZIM
                                                                   • Manufactures: ALDURAZYME,
     • Manufactures: ROCTAVIAN Drug Substance + Sterile DP
                                                                     NAGLAZYME, PALYNZIQ, VIMIZIM,
                                                                     VOXZOGO Drug Substance                     • 2023: Sterile Drug Product Capability
     • 2020: New Gene Therapy Pilot Plant commissioned
     • Footprint: 6,500 ft2 @500L and 2000L Bioreactor Scale
     • Manufactures: New Gene Therapy Clinical Candidates

                             Substantial Track Record of Global Inspections and cGMP Compliance

18
Maximize Base                        Aggressive Life
     Indication Revenue                    Cycle Management

                           Sustainable
                            Growth &
                           Profitability
     Accelerate Clinical                   Balance Profits with
          Pipeline                           Reinvestments

19
Phase 3
                                                                                   6e13 vg/kg dose
                                                                            In Year 3               In Year 4
                                                                           N=132/112*                N=17**

                                                            Mean                18.8                    15.2
                                FVIII Activity
        ROCTAVIAN                                          Median                8.4                    7.4

         PHASE 3               Annualized
                                                            Mean                 1.0                    0.8
     3-YEAR and 4-Year      Bleeding Rate***
                           (bleeding episodes              Median                0.0                    0.0
         RESULTS                per year)

                             Annualized FVIII               Mean                 8.4                    11.1
                                Utilization
                           (infusions per year)            Median                0.0                    0.0

                         *N=132 (FVIII Activity); N=112 (ABR and AFR). Two of these patients discontinued from
                         the study prior to reaching Year 3. FVIII imputed to be 0 IU/dL; no imputation was
                         carried out for ABR and AFR.
                         **N=17. One of these patients discontinued from the study prior to reaching Year 4.
                         FVIII activity imputed to be 0 IU/dL; no imputation was carried out for ABR and AFR.
                         ***Annualized rate is for treated bleeds.
20
AAV payload expression in
                                                                                                    human cells
     •   Non-clinical and clinical studies of AAV episomes
         indicates that transgene expression is restricted by a

                                                                   AAV payload transcripts/ng RNA
         transcriptional mechanism

     •   Screen of approved small molecule drugs modulating
         this mechanism identified several promising candidates
         that increase transgene expression

     •   Next steps: Investigate in humans the potential of
         these compounds to augment initial expression, to
         extend or enhance sustained expression and reignite
         expression if lost

                                                                  Concentration of approved drug tested
                                                                   relative to Cmax of approved dose
21
IND-
                                      Therapeutic Focus          Product Candidate                         Research      Enabling
                                                                                                                                    Phase 1   Phase 2

                                                                 BMN 255 Hyperoxaluria (Small Molecule)
                                                                 BMN 351 DMD (Exon 51 Oligonucleotide)
     Research and Early Development

                                      Musculoskeletal/           BMN 349 A1ATD (Small Molecule)
                                      Metabolic                  Long Acting CNP (Peptide)
                                                                 MSK (Oligonucleotide)                    3 Candidates
                                                                 MSK (Gene Therapy)

                                      Non-Oncology               HEM (Biologic)
                                      Hematology                 HEM (Oligonucleotide)
                                                                 BMN 331 HAE (AAV Gene Therapy)
                                                                 BMN 293 MYBPC3 HCM (AAV Gene Therapy)
                                      Cardiovascular
                                                                 CV (AAV Gene Therapy)                    4 Candidates
                                                                 CV mAB
                                                                 CNS AAV (Gene Therapy)                   4 Candidates
                                                                 CNS (Oligonucleotide)                    4 Candidates
                                      Central Nervous System
                                                                 CNS (Peptide)
                                                                 CNS (Biologic)
                                      Total Addressable Market For IND Enabling & Phase I Programs                            $30B+

22
AGXT Deficiency         Increased Oxalate       Recurrent Kidney Stones

     In PH1 Inherited        Reduced AGXT function   Oxalate crystals lead to
     mutations disrupt the   causes increased        recurrent kidney stones
     AGXT gene               oxalate                 and kidney damage

23
Multi-ascending dose (MAD) Phase 1/2 underway

                                                      Single BMN 255 Dose in HHVs
            BMN 255           PH1 & Liver             -O- BMN 255 (n=6)
                               Disease
                                                      - - Mean of BMN 255
                                                      -∆- Placebo (n = 2)
              GO                   AGT
Glycolate             Glyoxylate            Glycine

                                                                       ---FDA approved
                       Oxalate                                         product for PH1

 24
SERPING1 haploinsufficiency      Reduced C1-Inhibitor              Episodes of Severe Angioedema

• Available therapies for HAE cannot provide enduring compensation for loss of C1-inhibitor activity

• “Troughs” of activity or missed treatment can leave individuals with HAE exposed to severe attacks

• Pre-clinical studies with BMN331 in SerpinG1 mutant mice and NHPs suggest that a 6 E13 dose of
  BMN331 may provide ample expression of C1-INH within an acceptable range of variation to
  durably protect recipients from HAE attacks
25
First 6 E13 dosing
                                                                                     (normal   range:19-37 mg/dl)
                                                                                                                    LLN

                                                         6e13vg/kg
     C1-INH antigen (mg/ dl)

                                                                                                      2e13vg/kg

                                                                                                        2e13vg/kg

26                                                  C1-INH antigen levels (mg/dL) by visit
Therapeutic Focus            Product Candidate / Key Attributes
                                  BMN 351 DMD (Exon 51 Oligonucleotide)
                                  •   > 10x fold enhanced potency by targeting novel splice enhancer
                                  •   At anticipated muscle concentrations > 20% dystrophin predicted

     Musculoskeletal/ Metabolic
                                  BMN 349 A1ATD (Small Molecule)
                                  •   Rapidly acting, orally bioavailable, binds to mutant A1AT
                                  •   Reduces polymer burden and improves liver health in mouse model

                                  BMN 293 MYBPC3 HCM (Gene Therapy)

     Cardiovascular               •   Cardiac specific C3 gene addition delivered by AAV
                                  •   Durable rescue of hypertrophy and function in animal disease model

27
Addressable
     Therapeutic Focus                                                    Product Candidate                          Patient
                                                                                                                   Population 1

                                                                          BMN 351 DMD (Exon 51 Oligonucleotide)        ~8K

     Musculoskeletal / Metabolic                                          BMN 255 Hyperoxaluria (Small Molecule)      ~800K

                                                                          BMN 349 A1ATD (Small Molecule)              ~52K

                                                                          BMN 331 HAE (Gene Therapy)                  ~13K
     Cardiovascular
                                                                          BMN 293 HCM (Gene Therapy)                  ~180K

28 1 Clinically   addressable patient population across BioMarin territories
5 Products Approved in the Last 8 Years

     Enzyme Replacement Therapies         Achondroplasia

     Phenylketonuria                      Hemophilia A Gene Therapy

29
Maximize Base                         Aggressive Life
     Indication Revenue                     Cycle Management

                           Sustainable
                            Growth &
                           Profitability
     Accelerate Clinical                   Balance Profits with
          Pipeline                           Reinvestments

30
Near Term Revenue Growth Enablers                   Accelerating Revenue Through Mid-Decade & Beyond

   • Launch VOXZOGO and ROCTAVIAN base
     indications
   • Achieve regulatory approval for U.S.                                                           $4B - $5B
                                                                                 Double-digit
     ROCTAVIAN
                                                                                   Growth
                                                                        $2.09B
   • Expand VOXZOGO and ROCTAVIAN
     indications
   • Continue to grow base portfolio
                                                                         20221      2023E              Mid-     End of
                                                                                                      Decade    Decade

                                                        Financial Expectations

              $4B - $5B of                           Continuing to Invest in R&D                 Committing to Large
          Revenue in Mid-Decade                        Pipeline Advancements                BioPharma Peer Profit Margins

31 1   Unaudited preliminary 2022 revenue estimate
GAAP to Non-GAAP Reconciliation                                                                                  P&L Guidance Measures

          GAAP Net Income                                                                                          P&L Line                             GAAP                   Non-GAAP

          Interest income (expense), net                                                                     Total Revenue                                  n                       n

          Provision for (benefit from) income
                                                                                                             Gross Profit
          taxes1                                                                                                                                            n
                                                                                                             % of Revenue
          Depreciation expenses
                                                                                                             R&D % of
                                                                                                                                                            n
                                                                                                             Revenue
          Amortization expense2                                                 n
                                                                                                             SG&A % of
                                                                                                                                                            n
          Stock-based compensation expense                                      n                            Revenue

          Significant non-recurring items                                       n                            Net Income (Loss)                              n                       n

          Non-GAAP Net Income                                                                                Diluted EPS                                    n                       n

32 1                                                                                                                        2
       We will continue to adjust for tax effects of individual non-GAAP adjustments but not the entirety of income taxes       To include amortization of intangible assets only
Maximize Base
                   •   Durable base business and launch of two potential blockbuster
     Indication
     Revenue           products drive opportunity to double revenue by mid-decade

                    • VOXZOGO beyond Achondroplasia opportunity significantly out-
     Aggressive
                      sizes base indication
     Life Cycle
     Management     • Studies underway to pursue ROCTAVIAN indications that more than
                      double the base indication

     Accelerate     • Proven track record applied to the most early-stage development
     Clinical         programs in Company history expected to drive revenue growth
     Pipeline         throughout decade and beyond

     Balance        • Plans for sustainable profitability growth and cash accumulation to
     Profits With     enable a sound capital allocation strategy focused on maximizing
     Reinvestment     shareholder return

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