Engineering materials from an understanding of nature - Ingenta Connect

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Engineering materials from an understanding of nature - Ingenta Connect
Impact Objectives
    • Investigate the material properties and behaviours of
      various biological and engineering materials in different
      environments at multiscales

    • Investigate how nature designs materials with atomic
      precision using computational modelling

    • Apply learnings to develop innovative materials with
      advanced functions

Engineering materials from
an understanding of nature
  Assistant Professor Chia-Ching Chou is using computational modelling to extend understanding of the
  origin of the material properties and benefit the design of nature-inspired materials

                        Can you explain         My research focuses on computational            the change of materials’ composition or
                        how you are using       investigations of the mechanics of biological   structure at the microscale can be linked
                        computational           and engineering materials. We investigate       to the change of the materials’ behaviour
                        modelling to            the material properties and behaviours of       at the macroscale. From our recent
                        uncover knowledge       various biological and engineering materials    study into the effect of mutation in the
                        about the way           in different environments at multiscales.       epithelial protein, our simulation shows
                        nature designs          Through a series of simulations and             that the local mutations in sequence don’t
                        materials?              numerical analysis, my research will provide    necessarily alter the secondary structure
                                                fundamental explanations of the origins         formations, but the interaction of amino
Nature uses surprisingly simple building        of mutability of materials and enable the       acids might affect the higher order assembly
blocks to design and make materials with        design of novel materials for biomedical and    of intermediate filament and lead to the
intriguing properties, such as light weight,    engineering applications. The outcome of        change of material’s properties. The results
high strength and remarkable toughness.         the studies will extend our understanding       could be correlated with diseases associated
Of the basic chemical elements, there are       of the origin of the materials’ properties      with genetic mutations and other structural
only 20 different amino acids in proteins       and benefit the current studies on nature-      defects in epithelial keratin to understand
which is fascinating to me. I am working        inspired materials to improve their design.     the effect of each mutation and develop
on understanding the design of natural                                                          possible treatments.
materials and how this relates to a given       Can you share a little about what you
material’s composition and properties. Now,     have discovered so far from your studies?       Are there any findings from these studies
with new electronics devices development,       In particular, about local mutations and        that you are particularly pleased with?
affordable computational resources, and the     structural formations?
breakthrough of computational algorithms,                                                       We are very happy to see the approach
the field of computational modelling provides   I have studied keratin proteins since I was     we developed can successfully construct
great opportunities to investigate how nature   a PhD student at Massachusetts Institute        a proper atomistic structure as an initial
designs materials and apply those learnings     of Technology (MIT). My PhD supervisor,         model for the study. In addition, from the
to the development of innovative materials      Markus Buehler, first introduced me to          simulation of the epithelial protein, we can
with advanced functions.                        this material and I continued the study at      reveal the molecular detail of the effect of
                                                National Taiwan University. We developed        local mutations on the protein structure and
You are based at the Institute of Applied       a multiscale approach to exploit the            higher order assembly.
Mechanics, National Taiwan University. What     mechanism of materials’ composition,
type of research are you involved in at the     structure, behaviour and mechanics at
Institute?                                      different scales. We have learned that

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Engineering materials from an understanding of nature - Ingenta Connect
Uncovering the properties
of hair and skin keratin
   A team based within the Institute of Applied Mechanics at National Taiwan University is investigating
   the molecular mechanisms and mechanical properties of different types of keratin. The findings will help
   to decipher how the structures of particular materials relate to their distinct functions and help integrate
   nanoscale approaches to engineering problems

Recent developments in electronics,            One of the team’s investigations involves         want to provide details that explain how
computers and computational modelling          looking at the molecular mechanisms and           the molecular composition affects the
are enabling researchers to analyse            mechanical properties of epithelial keratin       mechanical properties from a fundamental
the properties of materials that could         and trichocyte keratin using multiscale           point of view, as well as discussing the
dramatically improve engineering processes     modelling. ‘Keratin is a type of intermediate     mechanism in different hierarchies of
and even the ways we treat certain diseases.   filament protein and can be found in our          keratin.
Assistant Professor Chia-Ching Chou leads a    hair and skin. For the hair keratin (trichocyte
team that is taking inspiration from nature.   keratin), it is very tough (which is why the      COMPUTATIONAL MODELLING
                                               prince can use it to climb up the tower in        To aid their research, the team is using
EPITHELIAL KERATIN                             Tangled!), but has low extensibility,’ explains   atomistic and multiscale computational
AND TRICHOCYTE KERATIN                         Chou. ‘From an engineering perspective,           modelling. ‘My team focuses on developing
Based within the Institute of Applied          hair keratin is an extremely durable material     a bottom-up approach to investigate the
Mechanics at National Taiwan University in     that has been widely used in commercial           relationships of structure, behaviours and
Taiwan, Chou forms part of a project funded    products for over 2,000 years, such as wool       properties of the biological materials in
by the Ministry of Science and Technology      in the textile industry.’                         different environments at multiscales,’
in Taiwan that is working to understand the                                                      highlights Chou. ‘Molecular dynamics
molecular mechanisms and mechanical            The other type of keratin the team is             simulation is a powerful tool for us to
properties of materials.                       studying is skin keratin (epithelial keratin)     investigate the composition, structure and
                                               which cannot sustain the same load as             behaviour of materials at the molecular level
The hope is that by uncovering the precise     hair keratin, but has larger extensibility.       and it can be further applied to predict the
structures and mechanisms - and how they       Interestingly, while both hair and skin           properties of materials if a proper model is
affect the properties of a given material -    keratin share a high order of similarity,         used.’
the team can apply those findings to the       in terms of their molecular structure
development of new materials that will help    and hierarchical assembly, the molecular          The team starts from the study of
solve a number of problems.                    structure of hair keratin has stronger            microscale models of materials using
                                               interactions, which enables it to better          molecular dynamics simulation (MD) and
                                               resist external influence. The team therefore     extracts the information from MD to build

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Engineering materials from an understanding of nature - Ingenta Connect
a larger model to investigate the behaviour        There are other challenges too. ‘It is         understanding how mutations in chemical
at the macroscale. ‘By studying hair and           not easy to find keratin mesoscopic            compositions can affect the structure and
skin keratin, we want to provide an answer         experimental data for us to compare            mechanical properties of a material. The
regarding how sequence and chemical                the established meso-scale biomaterial         protocols they use could one day be applied

     By studying hair and skin keratin, we want to provide an answer regarding how sequence
     and chemical bonding affect the microscopic, mesoscopic and macroscopic level properties
     of materials and contribute to the materials’ distinct properties

bonding affect the microscopic, mesoscopic         model, so the experimental data of similar     to the study of other fibre-like materials and
and macroscopic level properties of                materials, vimentin intermediate filament,     their mechanism, which could potentially
materials and contribute to the materials’         was compared first,’ says Chou. ‘When          be exploited in the design of bio-inspired
distinct properties,’ confirms Chou. Through       we use conventional MD simulations, we         polymers, fibre materials, novel composites
the use of MD, they will provide insights          sometimes face time scale and chemical         and targeted drug delivery systems. l
into the mechanisms of chemical bonds in           reaction limitations and may not be able to
materials and illustrate the importance of         solve representative molecular structures.’
the environment which the material finds           To overcome the challenge, they have
itself within.                                     chosen to use advanced MD simulations,
                                                   such as Replica exchange molecular
                                                                                                     Project Insights
Importantly, by elucidating the link between       dynamics. This has helped the team to break       FUNDING
the chemical composition, protein structure        through the time scale limitations and solve      Ministry of Science and Technology
and properties of different keratins, the          representative molecular structures.              (Taiwan): Grant number
team will be able to build knowledge of                                                              1082218E002072MY2
other fibre-like materials. ‘In addition, we       FUTURE PROGRESS
                                                                                                     TEAM MEMBERS
hope to learn how mutations in chemical            Chou is now developing their model to
                                                                                                     Chien-Yu Pan, Chen-Yu Yang, Tsung-Wan
composition affect the structure and               study the properties of keratin fibrils at a      Hsiao, Yu-Chang Lai, Tzu-Lun Huang
properties of keratins, and apply those            larger scale. ‘Recent studies have shown
results to diseases that are caused by             that the keratin intermediate filament            CONTACT
mutations,’ Chou outlines.                         network plays an important role in a cell’s       Assistant Professor Chia-Ching Chou
                                                   response to tensile and shear stresses,’
                                                   clarifies Chou. ‘From the larger model,           T: +886 2 33665639
CHALLENGES WITH COMPLEXITY
                                                                                                     E: ccchou@iam.ntu.edu.tw
Understandably, given the complexity of            we can further study the mechanisms of
                                                                                                     W: https://sites.google.com/g.ntu.edu.tw/
the project, the team has faced a number           the keratin network in a cell’s response to       ccchou
of challenges which they have worked hard          tensile and shear stresses and the effects
to overcome. ‘For certain keratin protein          of various single-point mutations, which          BIO
molecules whose molecular structure                would help us understand the effect of each       Dr Chia-Ching Chou received her PhD
has not been solved by experiments or              mutation and develop treatments.’ They            degree from MIT. She is an Assistant
                                                   are also planning to apply this approach to       Professor in the Institute of Applied
simulation, the team uses homology
                                                                                                     Mechanics, National Taiwan University.
modelling methods or previous in-house             build other keratin proteins and investigate
                                                                                                     Her research interests are associated
approaches developed by the group to build         how the environmental influence affects the       with the employment of atomistic and
an initial model,’ points out Chou. However,       structure and mechanical property using full      multiscale computational modelling
there are limitations to the crystal protein       atomistic models.                                 to understand the mechanics of
structure they use as a template, so they                                                            materials, including biomaterials and
combine the results to build a full-length         Ultimately, Chou and the team are filling         synthetic materials at the nanoscale and
                                                   in knowledge gaps that are vital to our           microscale, with an aim to integrate
model.
                                                                                                     nanoscale approaches to engineering
                                                                                                     problems.

Atomistic model of keratin k5/k14-2B heterodimer

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