2019 Massey University and Plant & Food Research - SING Aotearoa
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Massey University and
Plant & Food Research
2019
Karakia
Ko te Mauri ohooho, whaka ū i te mana,
i te wehi, i ahu mai i ngā Kāhui o ngā Ariki!
Tukua tēnei mata ohooho ki runga ki ēnei Tauira,
ki ēnei Taura, ki ēnei Tama, ngā rerenga o Tū!
He whatinga Toka Tapu, he Whāriki raranga a Io,
Io Matuanui, te matawhaiapu, te mata āwhio,
i ahu mai i te mana āwhiowhio, te arawhata
ki te Toi o ngā Rangi, ki te koopu ora o Taane!
Tākina mai te Mauri i te hūhā o Hine-te-reremanu,
kia puta ki te Wheiao ki te Ao Mārama!
Ūhi! Wēro! Tau mai te Mauri!
Haumi ee! Hui ee! Tāiki ee!!
(Na Waka Vercoe from Ngāti Awa: This karakia whakamaunu waka refers to the joining
of the spirits of the people with the spirit of the waka and that of the kaupapa)
He mihi
Tuia ko te Rangi e tu nei
Tuia ko te Papa e takoto nei
Tuia ko te here tangata
Ka rongo te pō
Ka rongo te ao
Tihei mauri ora
Tuatahi ka huri ra ngā mihi ki a Io te pūkenga, Io te wānanga, Io Matua Kore.
Tuarua ki ngā tini aitua o tēnā iwi, o tēnā iwi puta noa i te motu. Haere koutou ki te
huinga o te kahurangi.
Tuatoru ki ngā whatu mōrehu o rātou mā, ki ngā mana, ki ngā ihi, ki ngā wehi,
nei ra te mihi maioha ki a koutou i ngakau nui ki tenei kaupapa.
He mihi hoki ki te Te Kunenga ki Pūrehuroa me te Rangahau Ahumara Kai. Na ratou i
whakaae kia tu tenei wananga whakahikohiko hinengaro.
No reira, tēnā koutou, tēnā koutou, tēnā koutou katoa.
SING AOTEAROA 2019 Welcome to the fourth SING Aotearoa internship programme. The Summer Internship for Indigenous Genomics is a key capacity building initiative funded by Genomics Aotearoa. In recent years there has been significant advances in the fields of genetics and genomics and an increasing focus on Māori populations and indigenous species. All research conducted in Aotearoa New Zealand should involve consultation with Iwi Māori so it is important that we understand enough about the technical, ethical and cultural issues to engage researchers in robust discussions during that process. The SING Aotearoa programme is designed to develop your understanding of genomics alongside some of the best researchers in New Zealand. We are grateful that researchers like Dr Phil Ross, Dr Patrick Biggs, Prof Barry Scott, Dr Liggy Liggins and Dr Matt Anderson have made space to spend time with us and share their knowledge and experience. Make use of this time by asking lots of questions. The SING Aotearoa workshop is a week-long internship modelled on an existing SING- USA programme (http://conferences.igb.illinois.edu/sing/home). We are fortunate to have a faculty mentor from the USA programme coming to join us in Aotearoa. Dr Matt Anderson will add an international dimension to the programme and bring his experience working with American Indian and Alaska Native interns. Massey University and Plant & Food Research are our hosts for 2019. Massey University is based in Palmerston North, New Zealand, with significant campuses in Albany and Wellington. Massey University is the only university in New Zealand offering degrees in aviation, dispute resolution, veterinary medicine, and nanoscience. Plant & Food Research is a New Zealand-based science company providing research and development that adds value to fruit, vegetable, crop and food products. We are also grateful for the time and resources that are being committed by a range of people and organisations including the Riddet Institute to support this initiative. While genetics has been a lightning rod for debate in past years we hope that this workshop provides a space to share ideas and thoughts in an informative way. Mā te mōhio ka mārama, Mā te mārama ka mātau, Mā te mātau ka ora. Through awareness comes understanding, through understanding comes knowledge, through knowledge comes wellbeing. Kia ora koutou katoa. SING Aotearoa Conveners Maui Hudson Phillip Wilcox Katharina Ruckstuhl
Venues Huia Marae Address: State Highway 1, 9km east of Waitarere Beach Massey University Address: Riddet Rd, Palmerston North Phone: +64 6 356 9099 Plant & Food Research Address: Fitzherbert Science Centre Batchelar Road Palmerston North Phone: +64 6 953 7700
Accommodation Participants and mentors requiring accommodation will be staying at Manawatū Halls The Residential Services Office Cnr Rehab Road and University Avenue Massey University Palmerston North 4442 New Zealand +64 6 951 6300 +64 0800 22 88 00
Programme
Monday, January 21 (Manawatū Halls)
5:00 – 5:45 pm Check into rooms
6:00 – 8:00 pm Welcome/reception dinner at accommodation
Reception dinner Maui Hudson &
- Welcome Phil Wilcox & Katharina
- Whanaungatanga Ruckstuhl & Nick
- Faculty introductions Roskruge
- Alumni introductions
- Pre-workshop assessment
Tuesday, January 22 (Huia Marae)
7:30 – 8:30 am Breakfast (accommodation)
9:30 – 10:00 am Pōwhiri
10:00 – 10:30 Mana whenua kōrero
am
Break – 15 min
11:00 – 12:30 Introduction to Genetics Phil Wilcox & Simon Hill
pm
Lunch
1:30 – 2:30 pm CELSI: Cultural Foundation Maui Hudson & Moe
Intro to Tikanga in the Lab Milne
2.30 – 3.00 pm Te wero mō te wiki Katharina Ruckstuhl
Break – 15 min
3:30 – 5:00 pm Introduction to Breeding Technologies Phil Wilcox
and Gene Editing
5:00 – 5:15 pm Participant evaluations of the day
6:00 – 7:00 pm Dinner at Marae
Guest speaker – Phil Ross
Wednesday, January 23 (Massey University)
7:30 – 8:30 am Breakfast (accommodation)
9:00 – 12:00 pm Plant Genetics Laboratory Phil Wilcox & David
Chagne
12:00 – 1:30 pm Lunch talk – Identifying microbes Dr Matt Anderson -
associated with rheumatoid arthritis International SING
within the Lakota faculty
1:30 – 3:00 pm Bioinformatics lab Patrick Biggs and Anne
McDonald
Break – 30 min
3:30 – 5:00 pm Approaches to Commercialisation Jason Mika
5:00 – 5:15 pm Participant evaluations of the day
6:30 – 8:30 pm Dinner at Accommodation followed by Debrief
Thursday, January 24 (Plant & Food Research & Riddet Institute)
7:30 – 8:30 am Breakfast
9:00 – 12.00pm Plant Gene Editing workshop David Chagne & Revell
Drummond
PFR Seminar Room
12:00 – 1:30 pm Lunch
1:30 – 2:30 pm Food Innovation – Partnering with Melanie Ruffell & Jane
Science Mullaney
2.30 – 3.30pm Genetic Research on Taonga Species Maui Hudson
Phil Wilcox
Break – 30 min
4:00 – 5:30 pm Future thinking - Breeding Nick Albert / David
technologies in Aotearoa Chagne
5:30 – 5:45 pm Participant evaluations of the day
7:00 pm - late Dinner at Brew Union with Interns and Faculty
Friday, January 25 (Massey University)
7:30 – 8:30 am Breakfast
9:00 – 10:30 am Case Studies:
Barry Scott:
Blaise Forrestor-Gauntlet: Mouse stem cells and genome editing
Libby Liggins:
11.00 – 12.30pm Tikanga and the Lab Jordan Housiaux
Lunch
1:30 pm Final workshop evaluation and Maui Hudson &
poroporoāki Phil Wilcox
3:00 Participants return to airport
INTERNS for SING Aotearoa 2019 ❖ Miss Meri Haami ❖ Dr. Terri Te Tau ❖ Mr. Craig Marwick ❖ Mr. Howard Maxwell ❖ Mrs. Donna Kerridge ❖ Mr. Bronson Rikiriki ❖ Miss Anastasia Rickard ❖ Mr. John Tiatoa ❖ Rev. Rio Greening ❖ Miss Essie Van Zuylen ❖ Ms. Danielle Sword ❖ Mr. Jack Dakin ❖ Miss Te Aomihia Walker ❖ Ms. Jessica Kereama ❖ Miss Oriwia Spooner ❖ Miss Summer Wynyard ❖ Mr. Cran Gage ❖ Mr. Rodrigo Estrada de la Cerda ❖ Mr Justin Tamihana ❖ Mr Manaaki Davis SING Alumni ❖ Jordan Housiaux Genomics Aotearoa ❖ Ben Te Aika
SPEAKERS & MENTORS
Dr Matt Anderson
Matt is an assistant professor at The Ohio State University with a joint
appointment in the Microbiology Department in the College of Arts
and Sciences and the Department of Microbial Infection and
Immunity in the College of Medicine. He completed his PhD in the
Genetics Department at Stanford University followed by postdoctoral
positions in Judith Berman’s lab at the University of Minnesota and
Richard Bennett’s lab at Brown University. His research interests
center on the evolution of eukaryotic microbes that are relevant to
human health. A large contingent within his lab investigates how
genetic variability contributes to phenotypic diversity in the most
clinically relevant fungal pathogen to humans, Candida albicans.
Another major focus of his lab is to describe and understand how the
eukaryome, the eukaryotic microbes living on or within their host,
contribute to health.
Associate Professor Patrick Biggs
Dr Biggs completed an undergraduate degree in Applied
Biochemistry at Brunel University in 1992, and then a PhD in familial
cancer genetics through the University of London in 1996, both in the
UK. He worked in the UK and the USA before taking a position at the
Wellcome Trust Sanger Institute where he developed his interest in
bioinformatics. In 2007 he moved to New Zealand to work at Massey
University, and has been involved in next generation sequencing data
generation and analysis over the past 10 years, as part of the Allan
Wilson Centre, the Massey Genome Service and New Zealand
Genomics Ltd. In 2016 he started his current academic role –
Associate Professor in Computational Biology and Genomics – split
equally between two Massey University Institutes. His current
research interests are in comparative bacterial pathogenomics,
particularly species within the Campylobacter, Salmonella and
Escherichia genera, and in very high-resolution amplicon-based
community typing within species.
Dr David Chagne
A Senior Scientist with Plant and Food Research since 2004, Dr
Chagné’s research focuses on the application of genetic mapping and
genomics to elucidate the genetic control of important plant
characters, with a strong underpinning interest in the study of DNA
variations in plant genomes.
David has catalogued single nucleotide polymorphisms (SNPs) in the
apple and pear genomes and identified markers linked to significant
traits, including fruit antioxidant content, red flesh and peel,
crispness and aroma and further designed a SNP assay that has been
used to accurately predict fruit quality of young apple seedlings using
genome-wide selection, years before they first set fruit. He is also an
honorary senior research fellow at the University of Otago.Revel Drummond
Dr Drummond is a molecular biologist working in the field of plant
developmental biology, with most of his time spent actively
designing experiments and carrying them out in the laboratory and
glasshouse. His research at Plant and Food Research, since joining
in 2007, is focused on the discovery and functional characterisation
of genes involved in strigolactone (SL) hormone biology. More
recently he has developed particular technical expertise in LED
lighting systems for optimised plant growth and in CRISPR/Cas9
gene editing.
Blaise Forrestor-Gauntlet
Blaise completed a Bachelor of Science (2011) and a Master of
Science with Honours (2013) at the University of Waikato. She
worked as a Māori Intern at AgResearch Ltd from November 2013
until starting her PhD in July of 2014 which resulted in a
publication (Signal Inhibition Reveals JAK/STAT3 Pathway as
Critical for Bovine Inner Cell Mass Development, Meng et al.,
2015). Blaise is currently doing her PhD through the University of
Waikato and AgResearch under the supervision of Dr Linda Peters
and Associate Professor Bjorn Oback, investigating the cellular
mechanisms through which mutations in the Grainyhead-like2
gene cause progressive hearing loss type DFNA28. She lives in
Cambridge with her partner and two young children.
Dr Simon Hills Ngāti Porou
Dr Simon Hills (Ngāti Porou) is currently a Research Officer and
Research Development Advisor, Māori, at Massey University in
Manawatū. Dr Hills is Vice President of the Malacological Society of
Australasia, and is a councillor for Genomics for Aotearoa New
Zealand. In his research capacity, Simon is interested in the
composition, distribution and evolutionary history of the unique
ecosystems of Aotearoa. With a primary focus on marine molluscs,
Simon uses genetic and genomic data, alongside ecological and
paleontological evidence, to uncover the evolutionary history
(whakapapa) of native species. In addition to this work, Simon
collaborates on iwi/hapu led research on environmental
monitoring, conservation genomics, ecological restoration and
Māori landscape and ecological classification.
Jordan Housiaux
Jordan is a Veterinary Science PhD Candidate at Massey University.
Her mahi looks at the interface between mātauranga māori and
western science, and their application during whale stranding
events. She is interested in attitudes towards genetic research,
such as tissue sampling of taonga species, and the process of
analysis.Associate Professor Maui Hudson Whakatōhea, Ngāruahine, Ngā Puhi
Maui is an Associate Professor in the Faculty of Māori and
Indigenous Studies at the University of Waikato. He is an
interdisciplinary researcher with extensive experience across a
diverse range of research areas including traditional medicine,
indigenous research ethics, interface between indigenous
knowledge and science, and Māori data sovereignty. Maui has been
a member of a number of national and institutional ethics
committees and co-authored Te Ara Tika: Guidelines on Māori
Research Ethics – A framework for researchers and ethics
committee members, Te Mata Ira Guidelines for Genomic Research
with Māori, and He Tangata Kei Tua Guidelines for Biobanking with
Māori. He is a co-convener of the SING-Aotearoa programme.
Dr Libby Liggins
Libby is a Senior Lecturer in Marine Ecology at Massey University,
Auckland. Her research uses molecular genetic and genomic tools
to address fundamental questions in population ecology,
biogeography, and community ecology in marine systems, with a
particular emphasis on understanding the impact of a changing
climate. Libby participates in several international research
consortia and working groups intended to advance theoretical and
applied molecular ecology via interdisciplinary collaboration (for
example, the Diversity of the Indo-Pacific
Network, http://diversityindopacific.net/). In New Zealand, she
leads the ‘Ira Moana – Genes of the Sea’ project facilitating the
development of a metadatabase for the genetic data of New
Zealand organisms.
Anne McCartney
Ann Mc Cartney is a Genomics Aotearoa postdoctoral fellow at
Manaaki Whenua Landcare Research. She studied Genetics and Cell
Biology in Dublin City University, Ireland. From here she was
awarded the IRCSET award and undertook her PhD in the
Bioinformatics and Molecular Evolution Lab also in DCU under the
supervision of Dr. Mary O’Connell. Here she worked on the
generation of pipelines for both the identification and
characterisation of fusion genes with a specific focus on primate
genomes. Since moving to New Zealand in 2018 Ann has worked in
Manaaki Whenua creating protocols for the high quality
sequencing of endemic New Zealand species including stick insects
such as Clitarchus hookeri, fungi from the Herecium clade as well as
endemic birds such as the Hihi.Dr Jason Mika
Dr Jason Paul Mika is a descendant of the Ngāi Tūhoe, Whakatōhea,
Ngāti Awa and Ngāti Kahungunu tribes of Aotearoa New Zealand.
Dr Mika is a senior lecturer and codirector of Te Au Rangahau, the
Māori Business & Leadership Research. Dr Mika's research
interests include indigenous entrepreneurship, management and
methodologies.
Dr Jane Mullaney Ngāti Porou, Ngāti Raukawa
I am a scientist and have been with the Food & Bio based Products
Group at AgResearch in Palmerston North since 2017. Prior to
that, I was at the University of Queensland Australia for just under
4 years where I held a post-doctoral fellowship funded by the
Juvenile Diabetes Research Foundation (USA) researching how
the microbiome and Type 1 diabetes are linked. I have a PHD in
Food Technology but my background is in microbiology. During
my PhD I worked on how the gut microbiota transform food into
bioactives, in particular, broccoli and its anti-cancer effects. While
at a food futures hui hosted in Gisborne late 2017, I had a
conversation with a Tai Pukenga representative regarding their
ambitious plans to develop a commercial growing banana
industry on the East Coast. We are now partnering with this
group to help develop bananas from tissue culture. We used a
novel genetic technology here at AgResearch to identify the
Gisborne grown varieties we discovered that are already
successfully established there and to carry out some analysis of
the nutritional value of these locally grown bananas.
Dr Phil Ross
I am a marine ecologist at the University of Waikato. Since 2012 I
have worked as a Research Fellow/Post-doc at the University of
Waikato's Coastal Marine Field Station in Tauranga. My area of
specialty is marine community ecology and molecular ecology
with a focus on temperate soft sediment and rocky reef
ecosystems. I’m interested in understanding how communities of
sea creatures respond to and recover from disturbances,
particularly man-made disturbances. For the last few years my
research has been focused on trying to determine the ecological
effects of the MV Rena grounding on Astrolabe Reef. Recently, I
have begun working on toheroa, a large endemic surf clam
occurring on only a handful of west coast surf beaches. For this
work I will be combining archaeology and population genetics
with Matauranga Māori (Māori knowledge) to gain a better
understanding of early human influences on the distribution of
toheroa and the extent to which early Māori manipulated their
marine environment.Dr Melanie Ruffell
Melanie has extensive experience working in the high-value
nutrition sector, working closely with relevant stakeholders from
academia, government and industry. With a BSc in Human
Nutrition (Otago), Melanie’s specialism started in the UK where
she spent most of her 15 years away working with food
companies, scientists, regulators and policy-makers on health
claims for food. Melanie returned to NZ in 2015 to join a
premium food manufacturer and exporter, plus has worked with
an international provider of agri-tech services. Melanie
particularly enjoys developing partnerships and working with
diverse teams to help achieve common goals. As the Riddet
Institute’s Stakeholder Relationships Manager, Melanie works
collaboratively with internal stakeholders (Riddet Institute
partner organisations and scientists) and external stakeholders
(industry partners, government agencies and other entities like
Food HQ, National Science Challenges etc) to ensure project
delivery meets the Institute’s mission and contractual
responsibilities, and creates value for New Zealand’s agri-food
sector. Melanie is also currently refreshing the Riddet’s Māori
Strategy and works closely with Māori agri-businesses, iwi and
hapū.
Dr Katharina Ruckstuhl Ngāi Tahu, Rangitāne ki Wairau
Dr Ruckstuhl is the Associate Dean Māori at the Otago Business
School. She is a cross-disciplinary policy researcher in the areas of
Māori language, small business, sci-tech innovation, and ‘social
licence’ in the mining industry. She contributed a chapter to The
Routledge Handbook of Bioarchaeology in Southeast Asia and the
Pacific, examining Māori knowledge frameworks in the context of
two case studies that involved the return of kōiwi tāngata
(ancestral remains). She is currently leading a research team in a
national science challenge – Science for Technological Innovation
- looking at how sci-tech can better connect with Māori. Katharina
has a number of governance, research and other roles for Ngāi
Tahu, at both a pan-tribal and for her local hapū of Kāti Huirapa ki
Puketeraki.
Prof Barry Scott
Barry Scott is Professor of Molecular Genetics at Massey
University. His research focuses on understanding the molecular
basis of agriculturally beneficial symbiotic interactions between
plants and microbes. He was elected a fellow of the Royal Society
of NZ in 2010 and awarded a Humboldt Research Award from the
Alexander von Humboldt Foundation (Germany) in 2014. Barry is
a principal investigator in the Bio-Protection Research Centre, a
national centre of research excellence. He was awarded the New
Zealand Association of Scientists Marsden Medal (2013).Dr Phil Wilcox Ngāti Rakaipaaka
Dr Wilcox is a Senior Lecturer in the University of
Otago’s Department of Mathematics and Statistics, and has
experience in applied genomics and statistical genetics. He is the
current convenor of MapNet a NZ-wide collective of gene mapping
scientists
(see https://mapnet.agresearch.co.nz/mediawiki/index.php/MapNet
:About) and the Project Leader of the Virtual Institute for Statistical
Genetics (www.visg.co.nz). Dr Wilcox also established Te Aroturuki, a
group of Māori scientists and advisors who developed a process to
assist Western research scientists engage with Māori
communities. He is formally a Kaihautu Māori in both the Biological
Heritage National Science Challenge and the BioProtection Research
CoRE, and is a mandated spokesman for Ngāti Rakaipaaka regarding
the Rakaipaaka Health and Ancestry Study. He has worked on
genetics of plant species (particularly forest trees) and human
diseases.Contact Information
Programme conveners
Maui Hudson 027 206 1183
Katharina Ruckstuhl 021 161 4820
Phil Wilcox 021 387 892
Programme co-ordinator
Tuti Nikora 027 725 8139
Host institutions
Massey University Dr Jason Mika – 021 970 421
Plant & Food Research Dr David Chagne – 027 631 0585
Accommodation: Manawatū Halls
The Residential Services Office
Cnr Rehab Road and University Avenue
Massey University
Palmerston North 4442
New Zealand
+64 6 356 9099
+64 6 951 6300
+64 0800 22 88 00
Palmerston North Taxis: +64 6 355 5333Reading List CELSI Cheung, M. J., Gibbons, H. M., Dragunow, M., & Faull, R. L. M. (2007). Tikanga in the Laboratory: Engaging Safe Practise. MAI Review, (1), 1-7. Du Plessis, R., Scott, A., Phillips, H., Cram, F., Tipene-Matua, B., Parsons, M., & Taupo, T. (2004). The social, cultural, ethical and spiritual implications of genetic testing: Preliminary findings (Constructive Conversations/Korero Whakaaetanga Research Report No. 3). Christchurch, New Zealand: Social Science Research Centre, University of Canterbury. Retrieved from http://www.conversations.canterbury.ac.nz/reportspapers.htm Hudson, M., Milne, M., Reynolds, P., Russell, K., & Smith, B. (2010). Te Ara Tika - Guidelines for Māori research ethics: A framework for researchers and ethics committee members. Auckland, New Zealand: Health Research Council of New Zealand. Merriman, T., & Cameron, V. (2006). Risk-taking: behind the warrior gene story. THE NEW ZEALAND MEDICAL JOURNAL. Vol 120 No 1250 ISSN 1175 8716 Tipene-Matua, B., & Wakefield, B. (2007). Establishing a Māori ethical framework for genetic reserach with Māori. In M. Henaghan (Ed.), Genes, society and the future (Vol. 3, pp. 379-422). Wellington, New Zealand: Brookers Ltd. Tupara, H. (2012). Ethics and health research: Decision making in Aotearoa New Zealand. AJOB Primary Research, 3(4), 40-52. P. L. Wilcox , J. A. Charity , M. R. Roberts , S. Tauwhare , B. Tipene‐Matua , I. Kereama‐ Royal , R. Hunter , H. M. Kani & P. Moke‐Delaney (2008) A values‐based process for cross‐ cultural dialogue between scientists and Māori, Journal of the Royal Society of New Zealand, 38:3, 215-227, DOI: 10.1080/03014220809510555 HUMAN GENETICS Buckley, HR., Tayles, N., Halcrow, SE., Robb, K.,& Fyfe, R. (2010). The People of the Wairua Bar: a Re-examination. Journal of Pacific Archaeology 1:1. Guilford, P., Hopkins, J., Harraway, J., McLeod, M., McLeod, N., Harawira, P., Taite, H., Scoular, R., Miller, A., & Reeve, AE. (1998). E-cadherin germline mutations in familial gastric cancer. Nature, Vol 392: 402-405. Gosling, AL., Matisoo-Smith, E., & Merriman, TR. (2013). Hyperuricaemia in the Pacific: why the elevated serum urate levels? Rheumatology Int. Gosling, AL, Buckley, HR., Matisoo-Smith, E., & Merriman, T. (2015). Pacific Populations, Metabolic Disease and ‘Just-So Stories’: A Critique of the ‘Thrifty Genotype’ Hypothesis in Oceania. Annals of Human Genetics, 00,1-11.
Knapp, M., Horsburgh, KA., Porst, S., Stanton, JA., Buckley, HR., Walter, RK., & Matisoo- Smith EA. (2012). Complete mitochondrial DNA genome sequences from the first New Zealanders. PNAS 109:45. www.pnas.org/cgi/doi/10.1073/pnas.1209896109 Manolio, TA. (2013). Bringing genome-wide association findings into clinical use. Natures Review Genetics, vol 14, 549-558. Manolio et al. (2015). Global implementation of genomic medicine: We are not alone. Science Translational Medicine, Vol 7:290, 1-9. Matisoo-Smith, EA., & Daugherty, C. Africa to Aotearoa: the longest migration. Journal of the Royal Society of New Zealand, 42:2, 87-92. http://dx.doi.org/10.1080/03036758.2012.673495 PLANT GENETICS Janick, J. (2013). Development of New World Crops by Indigenous Americans. Hortscience, 48(4): 406-412. Marshall et al. (2015) A DNA-based diagnostic for differentiating among New Zealand endemic Podocarpus. Tree Genetics & Genomes Tree Genetics & Genomes vol 11:69 Shepherd LD, de Lange PJ, Cox S, McLenachan PA, Roskruge NR & Lockhart, P (2016) Evidence of a strong domestication bottleneck in the recently cultivated New Zealand endemic root crop, Arthropodium cirratum (Asparagaceae) PLoS ONE 11(3): e0152455 doc10.137/journal.pone.0152455. Roskruge NR, Marshall CW & Shepherd LD (2011) Determining the identity of New Zealand Kamokamo (Cucurbita pepo, Cucurbitaceae), using mitochondrial DNA and morphological data. Agronomy New Zealand 41:157-166. Nelson WA, Breitwieser I, Fordyce RE, Bradford-Grieve JM, Penman DR, Roskruge N, Trnski T, Waugh SM, Webb CJ (2015) National taxonomic collections in New Zealand. 2 volumes: report 63 p and appendices 66 p. Wellington, Royal Society of New Zealand. Boocock, J., Chagné, D., Merriman, T. R., & Black, M. A. (2015). The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh. BMC Genomics, 16(1), 848. http://doi.org/10.1186/s12864-015- 2096-x INDIGENOUS Arbour, L., & Cook, D. (2006). DNA on Loan: Issues to Consider when Carrying Out Genetic Research with Aboriginal Families and Communities. Community Genetics, 9: 153-160. Taniguchi, N. K. , Taualii, M. , Maddock, J. (2012). A Comparative Analysis of Indigenous Research Guidelines to Inform Genomic Research in Indigenous Communities. The International Indigenous Policy Journal, 3(1). Retrieved from: http://ir.lib.uwo.ca/iipj/vol3/iss1/6
Hudson, M., Beaton, A., Milne, M., Port, W., Russell, K., Smith, B., Toki, V., Uerata, L., Wilcox, P. (2016a). He Tangata Kei Tua: Guidelines for Biobanking with Māori. Māori and Indigenous Governance Centre, Hamilton. Hudson, M., Beaton, A., Milne, M., Port, W., Russell, K., Smith, B., Toki, V., Uerata, L., Wilcox, P. (2016b). Te Mata Ira: Guidelines for Genomic Research with Māori. Māori and Indigenous Governance Centre, Hamilton. ‘The Ancestors Speak: Ko‒iwi Tangata, Matauranga Māori and the Development of Biological Anthropology in New Zealand’ p. 637 Katharina Ruckstuhl, Nancy Tayles, Hallie Buckley, Richard Bradley, Roger Fyfe and Matapura Ellison Claw, K., Anderson, M., Begay, R., Tsosie, K., Fox, K., Garrison, N. (2018). A framework for enhancing ethical genomic research with Indigenous communities. Nature Communications 9:2957. BIOINFORMATICS Cadzow, M., Boocock, J., Nguyen, H. T., & Wilcox, P. (2014). A bioinformatics workflow for detecting signatures of selection in genomic data. Frontiers in Genetics. http://doi.org/10.3389/fgene.2014.00293 Nguyen, H. T., Merriman, T. R., & Black, M. A. (2014). The CNVrd2 package: measurement of copy number at complex loci using high-throughput sequencing data. Frontiers in Genetics, 5, 248. http://doi.org/10.3389/fgene.2014.00248
SPONSORS Our thanks to the sponsors of this initiative
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