2021 River Basin Management Plan - Natura 2000 protected areas - Environment Agency

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2021 River Basin Management Plan - Natura 2000 protected areas - Environment Agency
2021 River Basin Management Plan
 Natura 2000 protected areas                                          Published: October 2019

Natura 2000 ‘Protected Areas’ and River Basin
Management Plans
Natura 2000 sites are one type of ‘Protected Area’ under the Water Framework
Directive (along with others including ‘Bathing Waters’ and ‘Drinking Waters’) and as
such are given special consideration within river basin planning.
Natura 2000 sites receive special legal protection to help conserve the internationally
important habitats and wildlife for which they are designated. They are part of a
European-wide network of areas protected for biodiversity. The aim of the Natura
2000 network is to assure the long-term survival of Europe's most valued and
threatened species and habitats. The network is comprised of Special Areas of
Conservation (SAC) for different habitats, and Special Protection Areas (SPAs) for
birds.
Natura 2000 sites make a significant contribution to achieving the ‘Favourable
Conservation Status’ (FCS) of the habitats and species of European level
importance in England and the UK. There are approximately 540,000 hectares of
terrestrial and coastal Natura 2000 (over 240 sites) in England which support water-
dependent wildlife (water-dependent in this sense are those wetland systems that
where the presence and character of species and habitats is predominantly
determined by water), where the maintenance or improvement of the status of water
is an important factor in their protection.
Note that there are also ‘Ramsar’ sites that are wetlands of international importance
designated under the Ramsar Convention. Many (although not all) Ramsar sites are
coincident with Natura 2000 sites. The same considerations are given to Ramsar
sites, as Natura 2000 sites by UK Government under river basin planning.
Water–dependent Natura 2000 (and Ramsar sites) are reliant on having enough,
and suitable quality water to sustain their special habitats and species. However,
many have become isolated by and in some cases their ecology damaged or
threatened by land and water use, and other issues such as invasive non-native
species. These pressures can act either directly on the sites or within their wider
catchments. Thus, River Basin Management Plans are crucial to ensure that land
and water use planning helps to meet the requirements of Natura 2000 sites, and
they have been instrumental in ensuring continued effort and investment in
maintaining and restoring sites toward meeting their conservation objectives.

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2021 River Basin Management Plan - Natura 2000 protected areas - Environment Agency
Photo 1: Partially restored lowland raised bog; Thorne & Hatfield Moors Natura
2000 site

Photo 2: River Wensum Natura 2000 SAC

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The relationship between Natura 2000 WFD protected
areas and WFD water bodies
Many of the Natura 2000 sites are also WFD water bodies. The boundaries may or
may not be fully coincident – i.e. a Natura site may comprise a single or multiple
water bodies, or be part of a water body. Note that there are large areas of wetland
Natura 2000 sites that are not also water bodies because the WFD definition of a
‘water body’ does not include wetland areas like marshes or bogs.
The pressures (e.g. excess nutrients, abstraction) impacting on protected areas and
water bodies are the same, although depending on the particular wildlife features for
which a Natura 2000 site is specially protected, the measures and timescales to
address those pressures may be different.
In some situations sites specially protected for biodiversity have different and
sometimes more stringent targets to meet in order to reach ‘favourable condition’
(which is when a site is meeting its conservation objectives) than those required by
WFD for water bodies to reach good ecological status (GES). The Conservation
Objectives (COs) for specially protected sites are underpinned by targets for water
quality and flow parameters for rivers, and water quality in lakes. This can be due to
different monitoring methodologies or a different and sometimes more precautionary
approach to objective setting, reflecting their internationally important designation.
Issues affecting water quality, and water availability and flow are of particular
relevance to Natura 2000 sites, and these are highlighted in the background sections
below.

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Background 1: Background to objective setting for sites
      specially protected for biodiversity:
      Conservation Objectives (COs) are the overarching objectives for Natura 2000
      and SSSI protected sites to maintain or reach favourable condition. These are
      set by Natural England. The conservation objectives may consist of qualitative
      and quantitative descriptions. The process for setting targets that underpin the
      objectives, is described through Joint Nature conservation Committee (JNCC)
      approved ‘Common Standards Monitoring Guidance’ (CSMG). These targets
      are used by Natural England in assessing the condition of Natura 2000 and
      SSSI protected sites
      Targets set out in revised Common Standards Monitoring Guidance (rCSMG)
      for rivers and lakes were considered in 2015 River Basin Management Plans
      when setting quantitative objectives for Natura 2000 and some SSSIs. rCSMG
      brings new targets including P for rivers and lakes, N in lakes, and flow in
      rivers. These quantitative targets are considered by Natural England as a pre-
      requisite for achieving the conservation objectives for Natura 2000 or SSSI
      designated sites.
      In the 2015 River Basin Management Plans, water quality and flow targets
      were set for Natura 2000 (and some SSSI) water bodies as either the agreed
      target to be reached by 2021, or as ‘interim progress goals’ for achievement
      by 2021 to act as a stepping stone towards achieving the longer-term targets.
      These targets have driven the maintenance and improvement of the condition
      of sites specially protected for biodiversity.
      rCSMG based targets, or interim progress goals, where agreed locally
      between Environment Agency and Natural England Teams, are advisory
      when used to inform regulatory measures under current River Basin
      Management Plans. These measures aim to work towards the long term
      targets, taking into account effectiveness, feasibility, etc. In some cases the
      EA and NE have agreed targets, more appropriate for achieving the CO’s, in
      accordance with the principles of rCSMG but based on locally derived
      evidence.

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Background 2: The water quality pressures of phosphorus,
      nitrogen and sediment on Natura 2000 sites:
      Eutrophication is too much nutrient in rivers, lakes/reservoirs, estuaries or the
      sea, causing excessive growth of algae and plants. This adversely affects the
      quality of the water and our uses of it, as well as damaging the local ecology.
      Too much phosphorus (P) and/or nitrogen (N) are the main reason for
      eutrophication. The main sources of these nutrients are sewage effluent and
      losses from agricultural land.
      Phosphorus is one of the main reasons that designated water-dependent N2K
      sites (rivers, lakes, and freshwater wetlands) fail their conservation objectives.
      55% of all assessed river water bodies and 73% of all assessed lake water
      bodies in England fail the current WFD phosphorus standards for Good
      Ecological Status. For those that are also designated as Natura 2000 rivers,
      around 50% of sites in England do not meet their rCSMG target for P. Current
      data indicate that around 60% of Natura 2000 lakes exceed their rCSMG P
      target.
      Significant progress has been made over recent decades on reducing
      phosphorus in rivers through measures put in place by the water industry and
      agricultural sectors. However, we know that current and planned measures
      using existing approaches to control eutrophication will not achieve Good
      Ecological Status in densely populated areas and may not be enough to
      prevent deterioration. We also know that further action is also needed to meet
      the sometimes tighter targets for Natura 2000 sites.
      Between 2020 and 2025 water companies will investigate the measures
      needed to address the water industry contribution towards achieving the
      objectives at 39 Natura 2000 sites. The investigations will provide the costs
      and feasibility of the required improvements at water body level and will be
      built into the Water company improvement programme for 2025-30.
      For assessing and driving potential further diffuse agricultural pollution
      measures:
          •   We are working with Natural England to produce or update Diffuse
              Water Pollution Plans (DWPPs) for 36 Natura 2000 sites. These set
              out the interventions necessary to achieve the Conservation Objectives
              for each site that is unfavourable due to diffuse water pollution. This
              includes an evaluation of how far existing interventions (measures and
              mechanisms) will take us and, if these are insufficient, the appraisal of
              alternative measures and regulatory mechanisms, including Water
              Protection Zones.
          •   The new Farming Rules for Water (2018) provide a statutory
              countrywide baseline for reducing agricultural phosphorus pollution.
              Advice-based voluntary schemes such Catchment Sensitive Farming,
              together with incentive-based approaches such as Countryside
              Stewardship are also helping. The Catchment-Based Approach is

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maturing and is also contributing to improvements. The new
            Environmental Land Management scheme will have an important role
            to play in delivering an improved approach to reducing agricultural
            nutrient pollution.
      Nitrogen is generally the main nutrient involved in eutrophication of estuaries
      and coastal waters. 16 estuaries in England are designated under Nitrates or
      Urban Waste Water Treatment Directives as affected by eutrophication and
      several of these are also Natura 2000 sites.
      Recent science shows that nitrogen may play more of a role than was
      previously considered the case, alongside phosphorus, in eutrophication of
      some freshwaters, particularly lakes. The UK Technical Advisory Group for
      the WFD is consulting in 2019 on proposed lake nitrates standards, for use
      alongside the current phosphorus standards for eutrophication control. In
      addition, nitrogen targets for Natura 2000 lakes are now included in the
      revised Common Standards Monitoring Guidance. Current data indicate that
      around a quarter of Natura 2000 lakes fail their nitrogen target.
      Agriculture is the largest contributor to nitrogen concentrations. The second
      most important contribution of nitrogen in water bodies is from sewage
      effluent. The measures in place for Nitrates and Urban Waste Water
      Treatment directives are helping to reduce to risks and impacts of
      eutrophication in affected water bodies. For some Natura 2000 sites the need
      for further measures to reduce nutrients in order to meet conservation
      objectives is being assessed.
      There are several voluntary or incentive programmes targeted at reducing
      nitrate input from agriculture, in addition to the directives mentioned above.
      These include the new Environmental Land Management Scheme which will
      have an important future role to play, Catchment Sensitive Farming (CSF),
      Cross Compliance, Environmental Stewardship schemes and Nutrient
      Management Plans. Water company catchment schemes and local nutrient
      trading initiatives are also helping to tackle agricultural nutrient pollution.
      Water quality issues pose challenges to achieving standards and targets for
      water bodies and sites specially protected for biodiversity. There are choices
      to be made around the priorities, and actions taken to address point and
      diffuse pollution; as well as the mechanisms used (especially in light of the
      initial phosphorous appraisal work outlined above). We welcome views on all
      these and related issues.

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Background 3: Water Resources - pressures on sites
      specially protected for biodiversity - challenges and measures
      to address the impacts:
      Drainage and abstraction which leads to changes and reductions in river flows
      and water tables, are some of the reasons why designated wetland, lake and
      riverine sites fail to meet their conservation objectives.
      The Governments Water abstraction plan, nested within the 25 Year
      Environment Plan, sets out how we will deliver on our commitment to
      addressing unsustainable abstraction through the use of existing regulated
      powers as well as developing a stronger catchment focus to address
      abstraction pressures.
      For Natura 2000 riverine sites, CSMG targets (see Background 1 section
      above) have driven action in previous WFD cycles. 74% of river water bodies
      associated with sites designated as Natura 2000 Protected Areas, currently
      meet the 2021 interim progress goals for flow, set out in 2015 River Basin
      Management Plans. (i.e. the goals are an interim step working toward full
      compliance with revised CSMG targets). If these same river water bodies are
      considered against the revised CSMG targets (rather than the interim goals)
      this figure is reduced to 66% (all figures based on high level assumptions).
      Work is continuing to amend licenses to meet the 2021 update to the River
      Basin Management Plans ‘interim’ progress goals for flow. Most of these
      changes have been around reducing the risk posed by ‘headroom’ in current
      licences, which could allow more water to be abstracted within existing
      licenced volumes. The revised CSMG targets may mean that further licences
      changes to modify or reduce water use across a catchment are required. In
      some cases this could affect current volumes normally abstracted, and not
      just the currently ‘unused’ water allowed as headroom within licences.
      The goals included in 2015 River Basin Management Plans have helped drive
      improvements towards the revised CSMG targets, although it is recognised
      that the timescales to achieve them may extend beyond current WFD River
      Basin Management plan cycles. In some places it will be challenging to meet
      the rCSMG targets using conventional approaches, and on top of this we
      anticipate additional future challenges from issues such as climate change
      and population growth, as outlined below under ‘Future pressures and
      emerging issues.’
      Measures to address the Challenges:
      There are a wide range of existing and potential mechanisms that can be
      used to address pressures on water resources, and which are outlined in the
      section ‘Existing mechanisms and future approaches’. Of particular relevance
      to water availability is the Governments Abstraction Plan that sets out the
      option of taking a stronger catchment focus where we plan to work with
      abstractors, other local stakeholders and catchment partners to co-develop
      solutions to:
          •   protect the environment by changing licences to better reflect water
              availability in catchments and reduce the impact of abstraction and

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•   Improve access to water by introducing more flexible conditions that
              support water storage, water trading and efficient use.
      Within this context, there are different approaches to meeting protected site
      targets. If the focus is on changing licences, the expectation is this would be a
      quicker solution to achieving the flow targets with a higher level of confidence.
      However, given current regulatory tools and measures available, there could
      be additional economic costs, which might include seeking alternative water
      sources, compensation liabilities and water company investment. The
      additional economic costs involved are likely to be borne by particular sectors.
      In some cases the implications and feasibility of such measures could mean
      that these licence changes may be difficult to achieve and take longer to
      implement.
      Alternatively, catchment solutions could be used to help move protected sites
      towards meeting the specific targets for flow. This could mean the economic
      impacts are spread wider across sectors and over a longer time period.
      However, it might mean a slower pace of progress, and the environmental
      outcome may be less certain compared to licence changes alone.
      Stakeholders may be required to work together to identify innovative solutions
      to accessing water whilst meeting targets, and it would require additional
      monitoring to evaluate progress.
      In some circumstances catchment solutions may need to be deployed
      alongside licence changes.

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Future pressures and emerging issues:
The pressures acting on Natura 2000 and Ramsar sites are the same as for the
wider water and wetland environment. However, in some cases the rarer or most
highly valued wildlife and habitats they are protected for, may be more sensitive, and
become more vulnerable to particular pressures. For example:
          •   Further growth in both the economy and population – may increase
              demand for water from both household and business, particularly in
              areas of country that are already be under water stress.
          •   Climate change is a key pressure likely to have increasing influence on
              water availability (which can also impact on water quality). Increasing
              temperatures, and the changes in the frequency and amount of winter
              and summer rainfall will affect all aspects of the hydrological cycle.
          •   Water availability and the changes to the natural flow regime, are likely
              to have impacts on the ecology of the sites, but it is a difficult thing to
              predict. We have asked the water industry to consider the implications
              of this for their plans through regional groups and national planning
              frameworks.
          •   For water quality, there is a risk of increased nutrient enrichment of
              ground and surface water, as dilution and flows become more variable
              (e.g. resulting from climate change), and some aspects of agriculture
              and domestic use of water change. However, which nutrients and how
              their concentrations will increase or decrease is hard to predict.
          •   Changes in land use could result from the effects of changing markets
              after EU exit, and farming support mechanisms, such as the introduction
              of the forthcoming Environmental Land Management Scheme.
          •   Some species introduced by humans, and invasive non-native species
              (INNS) may become more problematic. Without measures to control their
              populations or spread, existing INNS can expand their ranges. Changes
              in climate may also enable new INNS to become established.
          •   Other sources and pathways for water pollution, including that from
              excess atmospheric nitrogen.
          •   Other pollutants with direct toxic effect such as pesticides, veterinary
              medicines, and pharmaceuticals in ‘waste’ water.

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Existing mechanisms and future approaches to address
the challenges
The pressures outlined above on the natural environment and water–dependent
habitats and species may mean that new approaches are required to ensure that the
designated wildlife features of specially protected sites are conserved, and so natural
capital and ecosystem services are not further diminished.
There have been and are a number of programmes and mechanisms deployed to
help address the pressures and challenges faced by sites specially protected for
biodiversity, including Natura 2000 and Ramsar sites. These include Agri-
environment schemes, the Water Company National Environment Programme
(WINEP), Flood Risk Management schemes, Water Environment Improvement
Funding, and Water Environment Grant (some of these now superseded or historic).
These have contributed to bespoke programmes aimed at addressing particular
habitats or pressures, such as the joint NE/EA river and lake restoration
programmes, Diffuse Water Pollution Plan programme, EA’s Regional Coastal
Habitat Replacement programmes, non-native Invasive species initiatives, and the
water company ‘Asset Management Plans’.
There are also new mechanisms under development which will or may be relevant to
addressing the challenges. These include the new Environmental Land Management
Scheme (ELMS), and solutions such as ‘Conservation Covenants’.
To address water quality issues specifically there are initiatives such as farmer-led
nutrient management schemes (e.g. the cap and trade scheme being developed for
Poole harbour).
For water resource pressures, existing groupings of water companies and regulators
(e.g. Water Resources South East) consider water resource planning at a regional
scale. Also the Governments Abstraction Plan sets out options for taking a wider
catchment approach incorporating a range of potential measures, alongside existing
regulatory mechanisms (as detailed above in Background 2 section on Water
Resource Pressures).
The above measures and other mechanisms such ‘net gain’ and natural capital
planning may enable:
           •   modification of surrounding land use (urban or agricultural) in
               catchments of ground and surface water-dependent sites to increase
               resilience
           •   Restoring or creating more habitat (such as freshwater features currently
               close to coastal locations) away from vulnerable areas in advance of any
               changes/losses, to allow for species migration or mitigation for future
               losses. Doing so will also contribute to achieving and maintaining
               ‘Favourable Conservation Status’ for internationally important wildlife
               and habitat features
           •   Restoring natural processes in freshwater, wetland and coastal systems
               where appropriate, can help increase resilience to future climate change

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and other challenges. These principles are true of sites specially
            protected for biodiversity along with all water bodies. Note that guidance
            for managing freshwater and wetland habitats in this way available from
            CaBA, and the underpinning principles and evidence explained in NE’s
            narrative for conserving freshwater and wetland habitats in England
            (NERR064).

Alongside these new and future approaches, there are opportunities for different
sectors to work together to address the issues.

Opportunities for different sectors to work together to
address the issues.
These include (but are not limited to):
       •   The Government have asked all water companies to engage in regional
           water resources planning that transcends water company boundaries to
           identify optimal solutions for the country as a whole. Developing a national
           framework to give strategic direction to water company plans, increase
           resilience and improve the environment. It will be published in December
           2019 and set clear expectations of regional water resource planning
           groups. Through these regional groups there is an opportunity for all
           abstractors to work together in achieving the targets for Natura 2000 sites
           and other water bodies.
       •   Delivering agreed/appropriate catchment solutions - as part of the
           implementation of the Abstraction Plan and 25 Year Environment Plan
           we are testing a catchment approach to water resource management at a
           number of priority catchments to develop solutions. This could be used to
           enable collaboration between water industry and other sectors to ensure
           relevant Natura 2000 sites are protected.
       •   Water companies, industry, agricultural and other sectors, consumer
           groups, and environmental organisations to work together to further
           promote wise water use, and so reduce overall demand for water.
       •   Further trialling of catchment permitting and catchment nutrient balancing
           schemes for achieving Phosphorous and Nitrogen targets for water
           bodies within catchments.
       •   Local place based initiatives such as the Catchment Based Approach
           (CaBA) partnerships are central to water management and supporting
           wildlife. Defra’s Catchment Based Approach Policy Framework (May
           2013) requires a strategic catchment wide approach and to work in
           collaboration with local partners to manage the water environment. This
           catchment wide approach focuses on the management of water as a
           whole system from ‘source to sea’ and has the potential to better join up
           fragmented habitats and restore ecological functioning.
       •   Furthermore, many of the key issues we now face are more complex,
           intractable problems involving multiple pressures acting in combination;

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and therefore require action with multiple sectors, which local partnerships
           are well placed to facilitate.
       •   The Defra 25 Year Environment Plan reinforces the importance of a wider
           approach to resolving problems and incorporating multiple benefits
           through a whole systems approach and local place-based planning.
We therefore need an inclusive approach to local place based partnership working
that facilitates holistic management of all parts of the catchment system
(environmental, social and economic). Local partnership working does not
necessarily have to be based on catchment boundaries, but needs to continue to
adopt a ‘source to sea’ approach.
Whilst we are making progress, more needs to be done, and we welcome the
participation of existing and new partners at national and local catchment partnership
level to help deliver these important benefits for people and places.

We’d like to understand your views on the pace of action, any changes or new
measures, needed to address the pressures to achieve targets for Natura 2000 (and
Ramsar) sites. If you would like to let us know your views, please respond via
question 1 of the Challenges and Choices consultation (located on the Water Story
page).

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