ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research

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ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
ISIS-DMPKRx: An Antisense Drug for The
Treatment of Myotonic Dystrophy Type 1

C. Frank Bennett Ph.D.
Senior Vice President of Research
ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
Agenda
   2

            n Stages of Drug Development
            n Drug Development Strategies for Myotonic
               Dystrophy
            n Introduction to Antisense Technology
            n ISIS-DMPKRx:
                 ¤ Why we are excited about the drug
                 ¤ Where we are in the development process

Isis Pharmaceuticals │ Confidential                           Advances in Technology_SCrooke_070212
ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
The Stages of Drug Development
3

           ISIS-DMPKRx
ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
Drug Discovery Steps
4

    n Identify the therapeutic target → The Gene
    n Determine the therapeutic strategy
     ¤ What to target?
     ¤ How to target?

     ¤ When to target?

    n Screen to identify the drug candidate
     ¤ Activity
     ¤ Safety

                   Drug Development
ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
Federal, Public & Company Roles in Research & Development

5

     Government, Foundation Supported, Pharmaceutical Industry
                   Research are Complementary

                          Pharmaceutical Research

                                                    “
                                                        There is an ecosystem
             Clinical       Clinical Research           of science and
            Research                                    biotechnology. Public
                                                        organizations, patient
          Translational                                 organizations,
            Research            Translational           universities, Congress,
                                  Research              FDA, all of this is an“
                                                        ecosystem that is
                                                        envied in the rest of the
                                    Basic
      Basic Research               Research
                                                        world.

                                                                  – E. Zerhouni,
                                                                 Director of NIH
     Government (e.g. NIH)
     and Public (e.g. MDF)
     Supported Research
ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
1st Clue → What to Target?
    DM is Caused by a 3 Nucleotide Expansion in the DMPK Gene
6
ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
2nd Clue → Nucleotide Expansion Sequesters Proteins
         A Gain of Function Toxic RNA
 7

          DMWD           DMPK   SIX5

DNA

      pre-mRNA

             mRNA

      RIBONUCLEAR FOCI          RNA BINDING PROTEIN    ABERRANT mRNA           DM1 CLINICAL
                                DYSREGULATION          SPLICING                FEATURE

                                                      Chloride Channel     Myotonia
                                       MBNL           Insulin Receptor     Insulin Insensitivity
                                                      Cardiac Troponin T   ?Cardiac Arrhythmia
                                                      Tau Protein          ?CNS Effects
                                     CUG-BP
                                                      Myotubularin         ?Myopathic Effects
                                                      ?                    Cataracts
                                                      ?                    Testicular Failure
                                                      ?                    Hypogammaglobulinemia

                                                                                              6
ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
How to Target?
    Antisense Drugs
8
ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
How Genetic Information Flows From in DNA to Protein
    The “Central Dogma” of Molecular Biology
9

         Gene                   mRNA

                                                     Disease-Causing
                                                         Protein

                Transcription          Translation
                                                                       DISEASE
ISIS-DMPK Rx: An Antisense Drug for The Treatment of Myotonic Dystrophy Type 1 - C. Frank Bennett Ph.D. Senior Vice President of Research
Antisense Drugs Target RNA, not Proteins
10
     Gene (DNA)                   mRNA
                                                              Antisense Drug
                                                              Inhibition of RNA function

                                                                  Disease-Causing
                                                                      Protein
                  Transcription                     Translation

                                                       X              X             ↓ DISEASE

                                         Antisense Drugs can also inhibit the function of a
                                         disease causing RNA that doesn’t make a protein
                                         (a non-coding RNA)
                                         This is nearly intractable for other platforms
The Antisense Drug-Receptor Interaction
11

         Antisense
         Drug              RNA Target

     p ~16-20 base pairs required for specificity
Antisense Drugs
     Chemical Modifications Produce Desired Effects in the Body
12
12

      Commonly Used Chemical Modifications for Antisense Drugs
ISIS-DMPKRx: Promotes Degradation of the Toxic DMPK RNA
     An RNase H Mechanism of Action
13
13

13
Proof of Concept Studies:
                          Systemic Delivery of Antisense Drug Reverses Myotonia and
                          Spliceopathy in a Mouse Model of DM1 (HSA-LR)
    14

                          6
(Normalized to 18S RNA)

                                                                        PBS
  HSA-LR mRNA Level

                          4                                             190403
                                                                        445236
                                                                        445238

                          2

                          0
                                 d

                                                                       TA
                                                    c
                                                  ro
                              ua

                                                 t
                              Q

                                              as
                                              G

                                                                                 Serca-1
                                                        neg. control
                                                        pos. control
                                                        wild-type

                                                                       PBS   190403   445238   445236

                                     + ex22
                                     - ex22                                                             TA
                                                                                                             Wheeler et al., Nature 488: 111, 2012
Next Step:
     Demonstrate Reduction of DMPK RNA in Muscle of Different Species
15
Proof of Concept:
                                       Marked Reduction of Endogenous mDMPK RNA Levels in Mice by
                                       an RNase H Antisense Drug
16

                                                Tibialis Anterior                                                                      Diaphragm
                            120                                                                                           120

                                                                                                mRNA Expression (% PBS)
mRNA Expression (% PBS)

                            100                                                                                           100

                                  80                                                                                       80

                                  60                                                                                       60

                                  40                                                                                       40

                                  20                                                                                       20

                                   0                                                                                        0
                                         PBS       486178 (25    486178 (50     486178 (100                                     PBS    486178 (25    486178 (50   486178 (100
                                                    mpk/wk)       mpk/wk)         mpk/wk)                                               mpk/wk)       mpk/wk)       mpk/wk)

                                                        Heart                                                                         Gastrocnemius
                                  120                                                                                     140
        mRNA Expression (% PBS)

                                                                                                mRNA Expression (% PBS)
                                  100                                                                                     120
                                                                                                                          100
                                   80
                                                                                                                           80
                                   60
                                                                                                                           60
                                   40
                                                                                                                           40
                                   20                                                                                      20
                                    0                                                                                       0
                                          PBS       486178 (25     486178 (50     486178 (100                                   PBS     486178 (25   486178 (50   486178 (100
                                                     mpk/wk)        mpk/wk)         mpk/wk)                                              mpk/wk)      mpk/wk)       mpk/wk)
Proof of Concept:
     Reduction of DMPK RNA Levels in Non-human Primates
     (Cynomolgus Monkey) by an Antisense Drug
17

                                        mRNA expression from several monkey tissues
                               140

                               120

                               100
     mRNA Expression (% PBS)

                                80
                                                                                                           PBS
                                60                                                                           DMPK
                                                                                                           ISIS    Drug
                                                                                                                486178

                                40

                                20

                                 0
                                     Liver   Tibialis Anterior Quadriceps Gastrocnemius   Kidney   Heart

 Dose and duration: 40 mg/kg BW; day 1,3,5,7 and then once weekly for the next 12 weeks (total of 16 doses)
Proof of Concept:
     Prolong Duration of Effect with a DMPK Targeting Antisense Drug
     in Monkey Muscle
18

             PBS      DMPK Drug   DMPK Drug   DMPK Drug   DMPK Drug
                       7 weeks     13 weeks    19 weeks    26 weeks
The Screening Process
     The Discovery of ISIS-DMPKRx
19
Partnered with
     ISIS-DMPKRx
20

     n Generation 2.5 antisense drug

         Constrained ethyl nucleotide   2’-MOE (methoxyethyl)

     n Promotes degradation of the mutant DMPK
        transcript by the RNase H mechanism of action
     n Delivered by subcutaneous injection ~once per week
The Stages of Drug Development
21
Preclinical Phase
     Before Testing in Humans
22

     n Characterize potential adverse drug effects
      ¤   Define potential organ or tissue damage induced by the drug
      ¤   Define reversibility of toxicity

     n Characterize pharmacokinetics
      ¤   Drug levels in blood

     n Characterize beneficial pharmacodynamic effects
      ¤   Does the drug do anything to the target in the body

     n Guide safe use in human clinical studies
      ¤   Determine safe and reasonable starting does
      ¤   Provide monitoring guidelines for the clinical study

     n Provide sufficient data to conclude that patients are not
        exposed to unreasonable risks
ISIS-DMPKRx
     IND Enabling Toxicology Summary
23

     n Mouse
      ¤   13 Week repeat-dose study with 13-week recovery

     n Monkey
      ¤   13-week repeat dose study and a 13-week recovery

     n Standard genetic toxicology and safety
        pharmacology studies
     n Results from toxicology study support continued
        development of ISIS-DMPKRx
ISIS-DMPKRx Phase 1
     CS1 Experimental Design - Single Dose
24

     Study Objective: to assess the safety and tolerability of
                  ISIS-DMPKRx in healthy volunteers
     n Blinded, randomized, placebo-controlled single ascending dose
     n 4 single dose cohorts (randomized 3 active: 1 placebo);
     n Doses: 50 mg, 100 mg, 200 mg, 400 mg
     n Single subcutaneous injection on Day 1, and subjects are
        followed for 28 days
     n Primary Endpoints:
       ¤ Safety and Tolerability

       ¤ Pharmacokinetic measures (plasma drug levels)
ISIS-DMPKRx Phase 1
     CS1 Single Ascending Dose Results
25

     n Phase 1 SAD in Healthy Volunteers → completed
      ¤ No safety or tolerability concerns identified
      ¤ Up to 400 mg single dose tested
ISIS-DMPKRx Phase 2
     Multiple Dose Study in DM1 Patients
26

     n Planned to start late this year in the United States
     n Drug will be given as a subcutaneous injection
     n Primary Goals:
       ¤ Safety & Tolerability, and PK

     n In addition, markers of biological activity and clinical biomarkers
        will be collected
ISIS-DMPKRx
     Summary
27

     n Antisense drugs demonstrate selectivity for nuclear retained
        RNAs
     n Systemic delivery of Gen 2.5 ASOs profoundly inhibited mouse
        DMPK RNA levels in normal mice and monkeys: treatment was
        well tolerated
     n Generation 2.5 antisense drugs have long duration of action in
        skeletal muscle
     n ISIS-DMPKRx Phase 1 single dose study in normal volunteers
        has been completed
     n ISIS-DMPKRx Phase 2 multiple dose study in DM1 patients to
        start late this year
Acknowledgements
28

 Dr. Charles Thornton - Univ. of Rochester                Isis Pharmaceuticals
 Dr. Thurman Wheeler - Univ. of Rochester/ Mass General        Sanjay Pandey
 Dr. Richard Moxley - Univ. of Rochester                      Robert Macleod
 Dr. Jack Puymirat - Laval University
                                                                Kathie Bishop
                                                                Laury Mignon
                                                              Kristina Bowyer
                                                                  (Lemonidis)
                                                                Husam Younis
                                                                  Scott Henry
                                                                   Dan Norris
                                                                    Viola Kam
                                                                   Gene Hung
                                                                    Matt Buck
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