COMMITMENT TO A CURE cellectis.com

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COMMITMENT TO A CURE cellectis.com
COMMITMENT TO A CURE

cellectis.com
COMMITMENT TO A CURE cellectis.com
FORWARD-LOOKING STATEMENTS

This presentation contains “forward-looking”        the risk that any one or more of our product
statements that are based on our management’s       candidates will not be successfully developed
current expectations and assumptions and on         and commercialized.
information currently available to management.
                                                    Further information on the risk factors that
Forward-looking statements involve known and        may affect company business and financial
unknown risks, uncertainties and other factors      performance, is included in our annual report
that may cause our actual results, performance      on form 20-F and other filings Cellectis makes
or achievements to be materially different from      with the securities and exchange commission
any    future    results,   performance      or     from time to time and its financial reports.
achievements expressed or implied by the
forward-looking statements.                         Except as required by law, we assume no
                                                    obligation to update these forward-looking
The risks and uncertainties include, but are not    statements publicly, or to update the reasons
limited to the risk that the preliminary results    actual results could differ materially from those
from our product candidates will not continue       anticipated in the forward-looking statements,
or be repeated, the risk that our clinical trials   even if new information becomes available in
will not be successful. The risk of not obtaining   the future.
regulatory approval to commence clinical
trials on additional UCART product candidates,      Cellectis proprietary information.
                                                    Not to be copied, distributed or used without
                                                    Cellectis’ prior written consent.

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COMMITMENT TO A CURE cellectis.com
OUR MISSION

Leverage our leadership in gene editing and CAR-T
   therapy to bring new hope to cancer patients
 through broadly available, off-the-shelf therapies

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COMMITMENT TO A CURE cellectis.com
CELLECTIS - COMMITMENT TO A CURE

                                                                                                                                      *

INNOVATION                                                LEADERSHIP                                                      PIPELINE                    MANUFACTURING
Protein engineering for                                   First clinical proof-of-concept for                             Pioneering robust           Scalable, efficient
best-in-class gene editing                                allogeneic CAR-T therapies, first                               first-in-class allogeneic   process to generate
& CAR technologies, cell                                  pediatric ALL patient in 2015                                   CAR T-cell programs         consistent and highly
engineering and culture                                                                                                   for different               potent CAR-T therapies
                                                          Making cancer therapy
technologies                                                                                                              hematological
                                                          cost-effective and                                                                           Two facilities being built
                                                                                                                          malignancies, as well
Innovative and robust                                     available faster to                                                                         to ensure manufacturing
                                                                                                                          as solid tumors (pre-
gene-editing (TALEN®)                                     patients globally                                                                           autonomy
                                                                                                                          clinical)
platform

                                      Reinforced by industry leading partnerships and a strong cash position

          * UCART19 is exclusively licensed to Servier and under a joint clinical development program between Servier and Allogene.

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COMMITMENT TO A CURE cellectis.com
ADVANTAGES OF ALLOGENEIC VS. AUTOLOGOUS CAR-T

Allogeneic process:
                        consistent manufacturing + quality                                              immediate treatment
                                    assurance

          HEALTHY DONOR          SCALABLE                    MASS PRODUCED                 1. CANCER                   2. OFF-THE-SHELF
          APHERESIS              MANUFACTURING               OFF-THE-SHELF                 TREATMENT DECISION          CAR-T THERAPY
                                 OF 100+ DOSES/BATCH         CAR-T THERAPIES

Autologous process:
                                              inconsistent manufacturing + 4-6 weeks before treatment

           1. CANCER TREATMENT               2. CANCER                     3. MANUFACTURING OF A                     4. INDIVIDUAL
           DECISION                          PATIENT APHERESIS             SINGLE PATIENT PRODUCT                    CAR-T THERAPY

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TALEN®: BEST-IN-CLASS GENE EDITING

PRECISION                         SPECIFICITY                 EFFICIENCY
targeting within 6 base pairs     recognition site is         TCR-α can be knocked-out with
of any target in the genome       32 base pairs long          over 95% efficacy for engineered
(effective changes)               (avoids errors)             CAR T-cells (ensures yield)

Editing genes allows disabling a functional gene, correcting a gene, or replacing or inserting a DNA
sequence at a chosen location in a genome.

TALEN® has been successfully used in the clinic to solve key challenges with allogeneic CAR-T including
protection from GvHD, mitigation of rejection, chimerism and enhanced safety via a suicide switch.

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UCARTs – ALLOGENEIC CAR T-CELLS THROUGH PRECISION GENE EDITING

                RATIONAL                       EFFECTIVE
               Engineering                     Persistence
        via accurate insertion                 via knock-out of CD52 or
                 of best CAR                   b2-microglobulin

                                     UCART
                          Universal Chimeric
                     Antigen Receptor T-cell

                                               TUMOR CELL

                     SAFE
                                               SMART
            Administration                     Action
    Avoid GvHD via knock-out                   CAR linked to suicide switch and
      of T-Cell Receptor (TCR)                 other cell engineering features (e.g.
                                               PD-1 KO)

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PARTNERSHIPS WITH INDUSTRY LEADERS

       Development & commercialization partners                                 Equity investor

UCART19 (with Allogene)            15 LICENSED TARGETS                    6.57% of outstanding
+ other targets                                                           shares

Up to $1.1B in development         Up to $2.8B in development
milestones                         & sales milestones
                                                                          As of April 30, 2019
Royalties on sales                 Royalties on sales

                       Up to $3.9B in potential milestone payments plus royalties

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COMMITMENT TO A CURE cellectis.com
PIPELINE: INNOVATIVE CANCER THERAPIES FOR UNMET NEEDS

  Program               Indication            Target       Pre-clinical                                                     Phase 1       Phase 2 / 3           2019 Anticipated
                                                                                                                                                                Milestones

UCART19*                    ALL               CD19          Mar. 2016        CTA MHRA          Mar. 2017

UCART123                    AML             CD123           Feb. 2017

UCART22                     ALL               CD22          Jun. 2018                                                                                           First dosing expected

ALLO-501*                   NHL               CD19          Jan. 2019

UCARTCS1                    MM                   CS1        Jan. 2019                                                                                           First dosing expected

ALLO-715**                  MM              BCMA            Jun. 2019                                                                                           Trial initiation expected

UCART22                     NHL               CD22

UCART123                     HL             CD123

UCARTCLL1                   AML                CLL1

ALLO-819**                  AML                FLT3

                                                                                                                                                Proprietary development program
* UCART19 and ALLO-501 are exclusively licensed to Servier and under a joint clinical development program between Servier and Allogene.
** Product candidates exclusively licensed to Allogene                                                                                          Licensed development program

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PIPELINE TARGETS MULTIPLE UNMET NEEDS IN CANCER

                ALL                                   AML                                MM
                 UCART22                        UCART123         UCARTCLL1           UCARTCS1

                                             Incidence rates per year
                                                                                              48,297

                                                               30,000
                                                                                 30,770
                                                 19,520

      5,960             7,500

        U.S.             E.U.                      U.S.      E.U.                 U.S.          E.U.
                                                   Survival data
                     20%                                  27%                        50%
                     5 years OS* in adults                5 years OS in adults       5 years OS in adults
                     55 years old       OS for stages 2-3
                     in pediatric patients

* Overall Survival

                                                                                                            P10
UCART19*: DESIGN OF PHASE 1 STUDIES IN R/R** ALL***

                                                          CD19 is a validated target expressed in B-cell malignancies

Adult ALL (CALM study)

 PRIMARY OBJECTIVE                             SECONDARY OBJECTIVES
 Evaluate safety, tolerability,                Objective remission rate at Day
 maximum tolerated dose                        28. Duration of response, time                          ONGOING
 (MTD) and regimen                             to remission, progression-free                                                 DL1****    DL2       DL3
                                               survival

Pediatric ALL (PALL study)

 PRIMARY OBJECTIVE                              SECONDARY OBJECTIVES
 Evaluate safety at a fixed                     Determine the ability to
 dose in patients aged                                                                                 ONGOING
                                                achieve molecular remission
 between 6 months and 18                        at Day 28
                                                                                                                                        DL fixed
 years old

   * UCART19 is exclusively licensed to Servier and under a joint clinical development program between Servier and Allogene
   ** Relapsed/Refractory
   *** Acute Lymphoblastic Leukemia
   **** Dose Level                                                                                                                                       P11
UCART19*: PHASE 1 R/R ALL – DATA** PRESENTED AT ASH 2018

           Safety:                                                                                         Efficacy:

                                                                  N=21                                        82% CR/CRi rate in FCA***-treated patients
                                                                                                              67% overall CR/CRi rate
                                  CALM PALL
                                                                                                              71% of these patients were MRD-
               14% Grade 3-4 Cytokine Release Syndrome                                                        Redosing with UCART19 resulted in cell
                                                                                                              expansion and MRD- status in 2/3 patients
               0% Grade 3-4 neurotoxicity
                                                                                                              Peak expansion observed mostly at Day 14
               0% Grade ≥2 skin Graft vs Host Disease

* UCART19 is exclusively licensed to Servier and under a joint clinical development program between Servier and Allogene
** Pooled data
*** Lymphodepletion regimen consisting of fludarabine, cyclophosphamide and an anti-CD52 mAb
                                                                                                                                                           P12
CD123 TARGET: RATIONALE FOR THERAPY

         Incidence rates per year            High expression on malignant         Limited expression on healthy
                                                        cells                                 cells
        AML                     HL                                        CD123

         30,000
                                                  CD123 is expressed
19,520                                          over 90% on malignant
                                    17,000       cells in AML, and also                                         CD123
                        8,110                    expressed on BPDCN
                                                     and Hodgkin’s
                                                        lymphoma

 U.S.     E.U.          U.S.         E.U.                                            Myeloid progenitor cells, pDCs

                                                                                                                        P13
UCART123 – PHASE 1 STUDY IN AML
                               Patient characteristics

                               Age and fitness: R/R in AML              Mutation status:               Progression: rapid
                               65 years and older, unfit patients       genetically complex            progression following relapse

Dose escalation (mTPI*) phase (R/R AML)
                                                                    28 days between the first 2 patients for each dose**, then 14 days for subsequent patients
                                              ONGOING at
        R/R AML                               Weill Cornell
        Up to 18                              MD Anderson
        patients                              Moffitt
                                              Dana-Farber                        DL1                     DL2                      DL3

Expansion Phase

                                                                                       R/R AML                      FIRST LINE AML PATIENTS
        TOTAL                              Expected                                                                 ELN*** Adverse genetic group
                                                                                       PATIENTS
        N=64-144                           in 2020
                                                                                       N=18-37                      N=46-107

    * Modified Toxicity Probability Interval Design
    ** 42 days if aplasia
    *** European Leukemia Net
                                                                                                                                                                 P14
UCART123 – PRECLINICAL RATIONALE IN AML

                        Development rationale:
                        High expression: blasts,                 Unmet need: high relapse rate                   Validated target: CD123 - clinically
                        independent of mutation status           and poor survival in R/R patients               validated in autologous CAR T-cell trials

                                   Elimination of AML cells                                                  Dose-dependent enhanced survival
% leukemia cells (PB)

                                                                                                % survival
                                                         Ara-C   PBS     TCR αβ KO      UCART123 2.5M           UCART123 1M

                                                                                                                                                             P15
CD22 TARGET: RATIONALE FOR THERAPY

        Incidence rates per year             Expression on malignant cells     Potential in disease space

        ALL                    NHL                                      CD22   Relapses following a
                                   115,118                                     CAR T-cell therapy, with
                                                                               malignant cells
                       74,680                       CD22 is expressed          expressing CD22
                                                       on B-cell
                                                      malignancies             B-ALL patients
           7,500                                                               expressing CD22
5,960
                                                                               Potential combination
U.S.        E.U.        U.S.        E.U.                                       therapy approach

                                                                                                            P16
UCART22 – PHASE 1 TRIAL DESIGN IN ALL

Patient characteristics
 Age and fitness:               CD19- & CD19+ ALL                              Offers a therapeutic solution to patients who cannot receive, or
 R/R B-ALL < 65 years          high CD22 expressing B-malignant cells          relapsed, after autologous CD19 CAR T-cell therapy

Dose escalation (mTPI) phase
                                                    28 days between the first 2 patients for each dose, then 14 days for subsequent patients

        R/R B-ALL
        Up to 18          Starting at
        patients          MD Anderson

                                                                     DL1                      DL2                      DL3

                                  Expansion Phase

                                        TOTAL
                                                                               Registration phase
                                        N=12 - 30

                                                                                                                                                  P17
UCART22 – PRECLINICAL RATIONALE FOR ALL

 Development rationale:
CD22 expression: in CD19                  Unmet need: high relapse rates (CD19-) after                  Validated target      Expandable market: potential
CD19 negative blasts                      CAR-T treatment, poor survival in R/R patients                in ALL and NHL        expansion into first-line ALL

                               Control of tumor progression                                                         Enhanced survival
     biolum signal (ph/s/sr)

                                                                                           % survival
                                        Vehicle       DKO/NT 10x106 cells          UCART22 3x106                    UCART22 10x106

                                                       UCART22
                                                       • Is highly efficient at eradicating tumors in vivo
                                                       • Result in increased survival in mouse model

                                                                                                                                                              P18
CS1-SLAMF7 TARGET: RATIONALE FOR THERAPY

                            High expression          Limited expression                     Monoclonal
Incidence rates per year   on malignant cells          on healthy cells                 antibody validation
           MM                                  CS1                            CS1
                                                                                     Elotuzumab is a monoclonal
                                                                                     antibody targeting CS1
             48,297
                             CS1 expression                                          Elotuzumab is safe and effective
                             (also known as                                          in MM patients
  30,770                   SLAMF7) has been
                             observed to be                                          Elotuzumab in combination with
                            higher and more                                          lenalidomide and
                           uniform than BCMA                                         dexamethasone in R/R MM
                                expression
                                                                                     patients shows:
                                                     T-cells, B-cells, macrophages   5.5% CR rate and 35% partial
    U.S.        E.U.                                 and NK cells
                                                                                     remissions

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UCARTCS1 – PHASE 1 TRIAL DESIGN IN MULTIPLE MYELOMA

                                                Patient characteristics
                                                  Age and fitness:
                                                  R/R MM patients < 65 years

Dose escalation (mTPI*) phase
                                                     28 days between first 2 patients, then 14 days between each consecutive patient

      R/R MM                    To start at
      Up to 18 patients         MD Anderson

                                                               DL1                     DL2                     DL3

                                 Expansion Phase

                                      TOTAL                               Registration phase
                                      N=12-30

                                                                                                                                       P20
UCARTCS1 – PRECLINICAL RATIONALE IN MULTIPLE MYELOMA

       Dose-dependent enhanced survival                                  Knock-Out of CS1 on CAR T-cells to suppress cross T-cell
                                                                                      reaction between UCARTCS1

                                                                       UCARTCS1                                            UCARTCS1

                                                                     CAR CS1
% survival

                                                                                                                             CS1 Antigen

                                                                     Tumor cell                                            T-Cell

                                       time (days)

               Day -10: tumor cells injection    Day 0: treatment
                                                                                   Preclinical evidence:
             Vehicle     UCARTCS1 3x10     6
                                                UCARTCS1 10x10   6
                                                                                   •   Strong anti-tumor effect in mice
                                                                                   •   Potential engraftment enhancement

                                                                                                                                           P21
BUILDING THE FUTURE OF ALLOGENEIC CAR T–CELL THERAPY
                                    2019 objectives: 3 proprietary programs in the clinic; 3 partnered programs in the clinic

               UCART123                                                   UCART22                                                     UCARTCS1                               UCARTCLL1

                                                                  Phase 1 dosing in R/R and                                  Phase 1 dosing in R/R MM                   Preclinical for R/R AML
          Phase 1 for R/R AML
                                                                  naive ALL in 2019 Potential                                in 2019
                                                                  use in NHL

2019

          UCART19*                                                                       ALLO-501*                                                         ALLO-715**

       PROOF OF CONCEPT                                                        Phase 1 in R/R NHL ongoing
                                                                                                                                                     Phase 1 initiation in R/R
       UCART
                                                                                                                                                     MM expected in 2019
       Phase 1 in R/R ALL ongoing

           * UCART19 and ALLO-501 are exclusively licensed to Servier and under a joint clinical development program between Servier and Allogene.
           ** Product candidates exclusively licensed to Allogene

                                                                                                                                                                                                  P22
TALEN® GENE EDITING – ADVANTAGES
 TALEN®:
Driven by protein/DNA                   Releases DNA ends accessible to DNA repair mechanisms         Over 25 years of building a strong
interactions to work on potential       to perform gene insertions and corrections through            patent portfolio with umbrella
off-site cleavage                        homologous recombination and gene inactivation through        patents on gene editing
                                        non homologous end joining

                                                                                                  DNA
                                                                                                  sequence

                                                                                                                 Our nucleases act like
                                                                              16 RVDs
                                                                                                                 DNA scissors to edit genes
                                                                                                                 at precise target sites

      Gene insertion or Knock-In (KI)                       Gene correction                      Gene inactivation or Knock-Out (KO)

                              Require homologous recombination
                                                                                                                                              P23
OPTIMIZING YIELD THROUGH HIGHEST GENE EDITING EFFICIENCY

                        High Knock-Out and Knock-In efficiency and specificity

                                                        TCRab
                TCRab                                                       CAR

       95.2% single targeted gene Knock-Out                     ~80% single gene integration
        TRAC Knock-Out                                           CAR Knock-In at TRAC Locus
        High Specificity                                         High specificity
        Prevents GvHD                                            Enables efficiency

                           Enables efficiency & protection from GvHD

                                                                                               P24
POWER OF TALEN® GENE EDITING: MULTIPLEXING GENE REPLACEMENT

                          Multiple advantages from combined Knock-Out, Knock-In

         B2M

                          TRAC                                            CAR @ TRAC

           88% double targeted gene Knock-Out                     60% double targeted gene insertion
               TCR and B2M                                         CAR insertion at TCR
               B2M Knock-Out exposes cells to potential killing    NK inhibitor at B2M
               by NK cells – which is prevented as shown
                                                                   Provides protection from NK cell-mediated rejection

                             Provides protection from GvHD and avoids rejection

                                                                                                                         P25
WITH TALEN® WE CONTROL OFF-TARGET CLEAVAGE

                              Discrimination between ON and OFF-site prevents OFF-site cleavage
                                     Utilization of engineered RVDs to discriminate HBB* and HBD** loci
                                                    preventing unwanted OFF-site cleavage

                                                             ON-site                                                             Engineered RVD
   HBB                                                                                                       Natural RVD

                                                                                    Mutation frequency (%)
                                          ON-site/OFF-site > 94% identity

   HBD                                                       OFF-site

                                                                                                                           OFF-site

                                                                                                                           ON-site

* HBB - Hem oglobin subunit beta
** HBD - Hem oglobin subunit delta

                                                                                                                                                  P26
UCART MANUFACTURING

       1            2                    3           4                             5

1. Frozen    2. Thawed      3. Lentivector    4. TALEN®-           5. Cell             6. Purification    8. Frozen
leukopaks    PBMCs          transduction      mediated gene        amplification       7. Fill & Finish   UCART
                                              editing                                                     products

            More than 5 years of experience in allogeneic CAR T manufacturing
            Validated gene editing technology for cell manufacturing
            5 UCART product candidates manufactured so far
            Full QC system in place, 3 wholly-controlled product candidates cleared for 4 clinical trials
            by the U.S. Food and Drug Administration

                                                                                                                      P27
BUILDING 2 STATE-OF-THE-ART PLANTS TO SECURE AUTONOMY

          SMART – Starting MAterial Realization for CAR-T products
             •       ~14,000 sqft in-house manufacturing in Paris, France
             •       Clinical Starting Materials
             •       Operational "go-live" targeted in 2020

          IMPACT – Innovative Manufacturing Plant for Allogeneic Cellular
          Therapies
                 •   ~82,000 sqft facility located in Raleigh, NC
                 •   Production of clinical and commercial UCART products
                 •   Operational "go-live" targeted in 2021

                                                                            P28
ANTICIPATED 12-MONTH MILESTONES

                                                                                          12 months
Clinical programs:                                                              Manufacturing:                                                 Gene editing:
UCART19*: Phase 1 in R/R ALL ongoing in 2019                                 Focusing on refinements to improve agility                       Explore applications into new
                                                                             and capacity to support future commercial                        areas: solid tumors and outside
UCART123: Phase 1 for R/R AML                                                launch of UCART products                                         oncology space
Expansion phase expected in 2020
                                                                             Internalizing large parts of our proprietary
UCART22: Expect Phase 1 first patient dosing in                              manufacturing chain for clinical starting
R/R ALL in 2019
                                                                             material:
UCARTCS1: Expect Phase 1 first patient dosing                                SMART plant in Paris, France
in R/R MM in 2019
                                                                             Building a proprietary GMP, commercial scale
ALLO-501* : Phase 1 in R/R NHL initiated in 1H                               manufacturing facility in 2019:
2019                                                                         IMPACT plant in Raleigh, North Carolina
ALLO-715** : Phase 1 expected in R/R MM in
2H 2019

    * UCART19 and ALLO-501 are exclusively licensed to Servier and under a joint clinical development program between Servier and Allogene.
    ** Product candidates exclusively licensed to Allogene

                                                                                                                                                                                P29
CELLECTIS HIGHLIGHTS

INDUSTRY LEADER IN GENE EDITING &                              ROBUST PROPRIETARY PIPELINE
ALLOGENEIC CAR T (UCART) TECHNOLOGY
                                                                 UCART123 – Phase 1 AML ongoing; dose escalation in
 First clinical proof-of-concept: UCART19 treated the            AML in 2019; wholly- controlled asset
 first pediatric ALL patient in June 2015
                                                                 UCART22 – Phase 1 first dosing in ALL in 2019; wholly-controlled
 Innovative gene editing (TALEN®) platform: to generate          asset
 best-in-class allogeneic CAR T-cells                            UCARTCS1 – Phase 1 first dosing MM in 2019; wholly-controlled
 Bringing innovative off-the-shelf therapies to a broader
                                                                 asset
 market, without treatment delays                                UCARTCLL1 – Preclinical development for AML; wholly-
                                                                 controlled asset
BEST-IN-CLASS MANUFACTURING
 Scalable, efficient, greater consistency and potency            FINANCIAL POSITION:
 Two facilities being built to ensure manufacturing autonomy     Cash through 2021

PARTNERSHIPS WITH LEADERS: UP TO $3.9B IN                        ~69.5% ownership of CLXT*
POTENTIAL MILESTONES PLUS ROYALTIES
 UCART19 – Licensed to Servier (U.S. rights to Allogene) and
 other undisclosed targets
 15 licensed targets to Allogene

   * As of March 31, 2019

                                                                                                                                    P30
THE CELLECTIS GROUP

                                                         ~69.5%* ownership

        NASDAQ: CLLS                                                                                          NASDAQ: CLXT

        EURONEXT GROWTH: ALCLS                                                                                $85.7M cash as of March 31, 2019

        $425M** cash as of March 31, 2019                                                                     Based in Minnesota, USA

        Expected to fund operations through 2021                                                              Consumer focused

        Based in Paris, France, New York & Raleigh, USA                                                       High value asset

        Patient focused

                                                                               Gene editing is the link

* As of March 31, 2019
** Including $85.7M of cash, cash equivalents and current financial assets from Calyxt for plant activities

                                                                                                                                                 P31
THANK YOU

Cellectis S.A.
8, rue de la Croix Jarry
75013 Paris – France

Cellectis, Inc.
430 East 29th Street
10016 New York, NY – USA

Cellectis Biologics, Inc.
2500 Sumner Boulevard
27616 Raleigh, NC – USA

investor@cellectis.com
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