Evolution: History of an Idea Syllabus - Course Description - Pitts Evolution: History of an Idea

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Evolution: History of an Idea Syllabus - Course Description - Pitts Evolution: History of an Idea
1/19/2021                                                         Syllabus for Spring 2021 BIOL-4650-LO1 XL

       Evolution: History of an Idea Syllabus

Course Description
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Evolution: History of an Idea Syllabus - Course Description - Pitts Evolution: History of an Idea
1/19/2021                                                                  Syllabus for Spring 2021 BIOL-4650-LO1 XL

In this course, you will be introduced to historical and modern theories of evolution and associated geological history, as well as to theories
from other fields that impacted the development of evolutionary thought. You will be introduced to and gain a working knowledge of On
the Origin of Species by Charles Darwin as you will read in its entirety. You will need to know names, some of which are in foreign
languages, dates, and accomplishments of various scientists throughout history, not just limited to Biology. You will also be reading
Darwin's Backyard, which details the various experiments that Darwin conducted to expand his theory, but also to introduce you to the
other factors in play at the time, geology in particular. By reading both of these books, you will get a good understanding of the topics
Darwin covered to convince us of the validity of Natural Selection and, as importantly, the reasons behind them. I will provide Lectures on
each chapter from Origin and associated geological or biological topics. Each Module has an associated Geological Aspects that you will
read and will be briefly discussed in lecture. You will have to memorize many facts. As such, this is not a typical science course; you will
be not only concerned with the scientific ideas, but the HISTORY associated with those ideas, so prepare appropriately.

Weekly Expectations
The course is set up in 14 weekly Modules. Weekly, you should expect to read a chapter of On the Origin of Species by Charles Darwin,
read a chapter of Darwin's Backyard by Jim Costa, read Geological Aspects that are written for each Module with selected optional
reading, and watch lectures. For each Module, I have supplied optional reading, many of which are linked to citation. I, however, realize
that there is much reading for this course already, and give these for completeness and more for you to browse, if you so choose.

Course Objectives

By the end of this course, you will be able to discuss Darwin's The Origin of the Species and have a working knowledge of evolution, as
well as the following:

 Essential Learning Objective
                                                            Learning Outcomes
 (from the IDEA Center)

 Objective 1. Gaining factual knowledge You will be able to recall facts, such as how variation and
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Evolution: History of an Idea Syllabus - Course Description - Pitts Evolution: History of an Idea
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 (terminology, methods, trends).                            natural selection leads to evolution.

                                                            You will be able to combat misconceptions regarding the key
 Objective 2. Learning fundamental
                                                            processes of the natural world, and understand how we have
 principles, generalizations, or theories.
                                                            acquired the scientific knowledge we have today.

 Objective 3. Learning to apply course
 materials
                                                            By understanding the course material you will be able to
 (to improve rational thinking, problem
                                                            think critically about topics in evolution.
 solving, and decisions).

                                                            Essays will help strengthen problem-solving skills. It is also
 Objective 4. Developing skills in
                                                            time for you to practice expressing complex concepts to your
 expressing oneself orally or in writing.
                                                            peers in writing.

Instructor
Dr. James P. Pitts
Department of Biology
Utah State University
Office: GEOL301
Office Phone: (435) 797-8872

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james.pitts@usu.edu (mailto:jpitts@biology.usu.edu)
Office Hours: Wednesday 3:00-5:00 pm by zoom

Course Resources
Required Texts:
The Annotated Origin by C. Darwin and J. Costa: ~$25
Darwin’s Backyard by J. Costa: ~$27

Optional Textbook:
Hallam's Great Geological Controversies

Evaluation Methods and Criteria

Weekly Lecture:
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My lectures will cover the main topics in that week’s assignment of The Origin of the Species, as well as short associated topics in
geology. Given that this course consists of you reading two books simultaneously, I will try to keep my lectures as brief as possible. At the
most they will be the equivalent of 2 class periods (100 mins), but more often they will be the equivalent of one class period (50 mins).
These lectures will stress the importance of the specific chapters of Origin and tie in additional topics in biology and geology.

Weekly Quizzes with Essays on The Origin of the Species, Geological Aspects, and my Lectures:

These weekly assignments will entail answering multiple choice questions and writing about core topics of evolution, or history of science
including geology, as it relates to our understanding of evolution, covered in chapters of The Annotated Origins and in my lectures.
Students will write about the scientific understanding of evolution, the evidence that led to that understanding, and the influence of
evolutionary thought on philosophy and society. Essays will be evaluated on depth of scientific, philosophical and societal understanding,
and on the quality of the writing. There will be 14 Quizzes with Essays assigned during this course. You will answer these questions on
your own and will turn them in via Canvas; this is not a group assignment. Late Quizzes will not be accepted and will result in a zero for
the assignment. The ESSAYS will be graded as follows: those that are not accurate or are grammatically impaired will get a zero; those
that are accurate will be ranked and be given a grade from A to F. For the Essays, if you write just a sentence or two, you will not receive
credit. It is an Essay after all.

They are open-book. I will provide a pdf of the questions so that you have them while you read the chapter without having to
open the Canvas quiz.

 Weekly Quizzes on Darwin’s Backyard:

These weekly assignments will entail multiple choice questions about Darwin’s experiments and motivation, extensions of Origins, core
topics of evolution, or history of science including geology, as it relates to our understanding of evolution, covered in chapters of Darwin’s
Backyard. This book will give you a better understanding, not only of evolution and associated geology, but of Darwin, the individual.

They are open-book. I will provide a pdf of the questions so that you have them while you read the chapter without having to
open the Canvas quiz.

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Participation in Discussion Questions

I will post 2 discussion questions per week, one on Tuesday and one on Wednesday. They will close at the end of the week on Sunday.
The total number will be 24 discussion questions and they will start on week 2/Module 2. For undergraduate students to receive 5% for
this task, they will need to respond to at least 12 of these discussion questions. For graduate students to receive 5% for this task, they
will need to respond to at least 18 of these discussion questions.

Final Test:

There will be a final cumulative test that will be similar to the multiple-choice questions asked in the weekly modules. It is closed-book,
timed, so you will actually have to retain information covered in lectures and general concepts gained from the readings.

Time Commitment

You should expect to commit:
2-3 hours a week reading and assimilating Origin or the Darwin reading for that week
1-2 hours a week reading and assimilating Darwin's Backyard
1-2 hours a week watching my lectures
1 hour per week responding to discussion
1 hour a week taking the quizzes
6-9 TOTAL HOURS PER WEEK spent on this course

Grade Scheme
Grading
Quizzes/Essays (14) on Origins                         50%
Quizzes on Darwin’s Backyard                            30%
Participation in Discussion                            5%
Final                                   15%
The following grading standards will be used in this class:
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  Grade             Range
 A                 100 % to 93.0%
 A-                < 93.0 % to 90.0%
 B+                < 90.0 % to 87.0%
 B                 < 87.0 % to 83.0%
 B-                < 83.0 % to 80.0%
 C+                < 80.0 % to 77.0%
 C                 < 77.0 % to 73.0%
 C-                < 73.0 % to 70.0%
 D+                < 70.0 % to 67.0%
 D                 < 67.0 % to 60.0%
 F                 < 59.0 % to 0.0%

Course Schedule/Outline

                                                                                       Quizzes

                                                                  Readings from Darwin’s               Darwin’s
 Day             Lectures
                                                                  Origin of the Species                Backyard

                 Organization and “On the Origin of
 Module
                 the Species”                       Costa’s Intro + Darwin’s
 1:                                                                                                    Preface
                 Movie: Humboldt and the Invention Intro to Origins
                 of Nature

 Module          “On the Origin of the Species”+                  Origins 1:Variation via              Chapter 1:

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 2:              Wales                                            Domestication                         Origins of the
                                                                                                        Experimentizer
                 Movie: Men of Rock 1

                                                                                                        Chapter 2:
 Module          “On the Origin of the Species”                   Origins II: Variation in
                                                                                                        Barnacles to
 3:                                                               Nature
                                                                                                        Barbs

                                                                                                        Chapter 3:
 Module          “On the Origin of the Species”
                                                                  Origins III: The Struggle             Untangling the
 4:
                                                                                                        Bank

 Module          “On the Origin of the Species”
                                                                  Origins IV: Natural Selection --------
 5:

 Module
 6:                                                                                                     Chapter 4:
                 “On the Origin of the Species”                   Darwin’s Sexual Selection
                                                                                                        Buzzing Places

 Module                                                                                                 Chapter 5: A
 7:              “On the Origin of the Species” +                 Origins V: Laws of Variation
                                                                                                        Grand Game of
                 Pangenesis                                       + Darwin’s Pangenesis
                                                                                                        Chess

 Module 8: “On the Origin of the Species”                         Origins VI: Difficulties       Chapter 6: The Sex

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                                                                  on Theory                      Lives of Plants

 Module 9: “On the Origin of the Species”                                                        Chapter 7: It Bears on
                                                                  Origins VII: Instinct
                 Movie: Men of Rock 2                                                            Design

 Module
                 “On the Origin of the Species”                                                  Chapter 8: Plants
 10:                                                              Origins VIII: Hybridism
                 Movie: Men of Rock 3                                                            with Volition

 Module
 11:             “On the Origin of the Species” +                 Origins IX: Geological         Chapter 9: Crafty and
                 Faunal Succession                                Record                         Sagacious Climbers

 Module
 12:                                                              Origins X: Geological          Chapter 10:
                 “On the Origin of the Species”
                                                                  Succession                     Earthworm Serenade

 Module                                                           Origins XI + XII:
 13:             “On the Origin of the Species”                   Geographic                     --------
                                                                  Distribution

 Module          “On the Origin of the Species” and Origins XIII + XIV:                          --------
 14:             Barnacles                          Mutual Affinities and

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                                                                  Conclusion

Attendance and Excused Absences Policy
This class is online.

Library Services
All USU students attending classes in Logan, at our Regional Campuses, or online can access all databases, e-journals, and e-books
regardless of location. Additionally, the library will mail printed books to students, at no charge to them. Students can also borrow books
from any Utah academic library. Take advantage of all library services and learn more at libguides.usu.edu/rc.
(http://libguides.usu.edu/rc)

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Utah State University supports the principle of freedom of expression for both faculty and students. The University respects the rights of
faculty to teach and students to learn. Maintenance of these rights requires classroom conditions that do not impede the learning process.
Disruptive classroom behavior will not be tolerated. An individual engaging in such behavior may be subject to disciplinary action. Read
Student Code Article V Section V-3 (https://studentconduct.usu.edu/studentcode/article5) for more information.

University Policies & Procedures
COVID-19 Classroom Protocols

In order to continue to provide a high standard of instruction at USU, and to limit the spread of COVID-19 during the pandemic, students
are asked to follow certain classroom protocols. These protocols are in place not only for your safety but also the safety of the rest of the

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campus community. You will be asked to clean your desk area at the start of each class, sit in designated seats, wear face coverings, and
follow dismission instructions. There may be individual medical circumstances that prevent some students from using face coverings.
These circumstances will be rare, but if they do exist, we ask that everyone be respectful. It is imperative that we each do our part so that
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Academic freedom is the right to teach, study, discuss, investigate, discover, create, and publish freely. Academic freedom protects the
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Academic Integrity – "The Honor System"

Each student has the right and duty to pursue his or her academic experience free of dishonesty. To enhance the learning environment at
Utah State University and to develop student academic integrity, each student agrees to the following Honor Pledge:
"I pledge, on my honor, to conduct myself with the foremost level of academic integrity."
A student who lives by the Honor Pledge is a student who does more than not cheat, falsify, or plagiarize. A student who lives by the
Honor Pledge:

     Espouses academic integrity as an underlying and essential principle of the Utah State University community;
     Understands that each act of academic dishonesty devalues every degree that is awarded by this institution; and
     Is a welcomed and valued member of Utah State University.

Academic Dishonesty

The instructor of this course will take appropriate actions in response to Academic Dishonesty, as defined the University’s Student Code.
Acts of academic dishonesty include but are not limited to:

     Cheating: using, attempting to use, or providing others with any unauthorized assistance in taking quizzes, tests, examinations, or in
     any other academic exercise or activity. Unauthorized assistance includes:
        Working in a group when the instructor has designated that the quiz, test, examination, or any other academic exercise or activity
        be done “individually;”

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            Depending on the aid of sources beyond those authorized by the instructor in writing papers, preparing reports, solving problems,
            or carrying out other assignments;
            Substituting for another student, or permitting another student to substitute for oneself, in taking an examination or preparing
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            permission;
        Continuing to write after time has been called on a quiz, test, examination, or any other academic exercise or activity;
        Submitting substantially the same work for credit in more than one class, except with prior approval of the instructor; or engaging in
        any form of research fraud.
     Falsification: altering or fabricating any information or citation in an academic exercise or activity.
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For additional information go to: ARTICLE VI. University Regulations Regarding Academic Integrity
(https://studentconduct.usu.edu/studentcode/article6)

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Utah State University is committed to creating and maintaining an environment free from acts of sexual misconduct and discrimination and
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 address sexual harassment in the workplace and academic setting.

The university responds promptly upon learning of any form of possible discrimination or sexual misconduct. Any individual may contact
USU’s Office of Equity (https://equity.usu.edu/) for available options and resources or clarification. The university has established a
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(http://www.usu.edu/policies/305/) ), and has designated the Office of Equity Director/Title IX Coordinator as the official responsible for
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Withdrawal Policy and "I" Grade Policy

Students are required to complete all courses for which they are registered by the end of the semester. In some cases, a student may be
unable to complete all of the coursework because of extenuating circumstances, but not due to poor performance or to retain financial aid.

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The term ‘extenuating’ circumstances includes: (1) incapacitating illness which prevents a student from attending classes for a minimum
period of two weeks, (2) a death in the immediate family, (3) financial responsibilities requiring a student to alter a work schedule to secure
employment, (4) change in work schedule as required by an employer, or (5) other emergencies deemed appropriate by the instructor.

Students with Disabilities

USU welcomes students with disabilities. If you have, or suspect you may have, a physical, mental health, or learning disability that may
require accommodations in this course, please contact the Disability Resource Center (DRC) (http://www.usu.edu/drc/) as early in the
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must be approved by the DRC. Once approved, the DRC will coordinate with faculty to provide accommodations.

Students who are at a higher risk for complications from COVID-19 or who contract COVID-19 may also be eligible for accommodations.

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Regardless of intent, careless or ill-informed remarks can be offensive and hurtful to others and detract from the learning climate. If you
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     Division of Student Affairs: https://studentaffairs.usu.edu (https://studentaffairs.usu.edu/) , (435) 797-1712,
     studentservices@usu.edu (mailto:studentservices@usu.edu) , TSC 220
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You can learn about your student rights by visiting:
The Code of Policies and Procedures for Students at Utah State University: https://studentconduct.usu.edu/studentcode
(https://studentconduct.usu.edu/studentcode/)
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Grievance Process

Students who feel they have been unfairly treated may file a grievance through the channels and procedures described in the Student
Code: Article VII (https://studentconduct.usu.edu/studentcode/article7) .

Full details for USU Academic Policies and Procedures can be found at:
     Student Conduct (http://www.usu.edu/studentconduct)
     Student Code (https://studentconduct.usu.edu/studentcode/)
     Academic Integrity (https://studentconduct.usu.edu/studentcode/article6)
     USU Selected Academic Policies and Procedures (http://www.usu.edu/provost/faculty-life/syllabus.cfm)
     USU Academic Policies and Procedures (http://catalog.usu.edu/content.php?catoid=4&navoid=546)
     Academic Freedom and Professional Responsibility Policy (http://www.usu.edu/hr/files/uploads/Policies/403.pdf)

Emergency Procedures

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Mental health is critically important for the success of USU students. As a student, you may experience a range of issues that can cause
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Students are also encouraged to download the “SafeUT App” (https://healthcare.utah.edu/uni/programs/safe-ut-smartphone-app) to their
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through texting and a confidential tip program that can help anyone with emotional crises, bullying, relationship problems, mental health, or
suicide related issues.

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Course Summary:
  Date                                              Details

                                                     Module 1 Annotated Origin Preface Quiz                               due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161067)
  Sun Jan 24, 2021

                                                     Module 1 Darwin's Backyard Preface Quiz                              due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162382)

                                                     Module 2 Annotated Origin Ch I Quiz                                  due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161068)
  Sun Jan 31, 2021

                                                     Module 2 Darwin's Backyard Ch 1 Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162384)

                                                     Module 3 Annotated Origin Ch II Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161072)
  Sun Feb 7, 2021

                                                     Module 3 Darwin's Backyard Ch 2 Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162385)

                                                     Module 4 Annotated Origin Ch III Quiz                                due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161065)
  Sun Feb 14, 2021

                                                     Module 4 Darwin's Backyard Ch 3 Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162386)

  Sun Feb 21, 2021                                   Module 5 Annotated Origin Ch IV Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161063)

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  Date                                              Details

                                                     Module 6 Annotated Origin Sexual Selection
                                                    Quiz                                                                   due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161075)
  Sun Feb 28, 2021

                                                     Module 6 Darwin's Backyard 4 Ch Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162387)

                                                     Module 7 Annotated Origin Ch V Quiz                                  due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161061)
  Sun Mar 7, 2021

                                                     Module 7 Darwin's Backyard Ch 5 Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162389)

                                                     Module 8 Annotated Origin Ch VI Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161073)
  Sun Mar 14, 2021

                                                     Module 8 Darwin's Backyard Ch 6 Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162392)

                                                     Module 9 Annotated Origin Ch VII Quiz                                due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161062)
  Sun Mar 21, 2021

                                                     Module 9 Darwin's Backyard Ch 7 Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162393)

                                                     Module 10 Annotated Origin Ch VIII Quiz                              due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161070)
  Sun Mar 28, 2021

                                                     Module 10 Darwin's Backyard Ch 8 Quiz                                due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162394)

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  Date                                              Details

                                                     Module 11 Annotated Origin Ch IX Quiz                                due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161066)
  Sun Apr 4, 2021

                                                     Module 11 Darwin's Backyard Ch 9 Quiz                                due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162396)

                                                     Module 12 Annotated Origin Ch X Quiz                                 due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161071)
  Sun Apr 11, 2021

                                                     Module 12 Darwin's Backyard Ch 10 Quiz                               due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162397)

  Sun Apr 18, 2021                                   Module 13 Annotated Origin Ch XI & XII Quiz                          due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161064)

  Sun Apr 25, 2021                                   Module 14 Annotated Origin XIII & XIV Quiz                           due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3161074)

  Wed May 5, 2021                                    Final Exam                                                           due by 11:59pm
                                                    (https://usu.instructure.com/courses/641918/assignments/3162405)

                                                     Participation
                                                    (https://usu.instructure.com/courses/641918/assignments/3174241)

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