Antibody Response to COVID-19 Vaccination in Patients Receiving Dialysis

 
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Antibody Response to COVID-19 Vaccination in Patients Receiving Dialysis
Antibody Response to COVID-19 Vaccination in Patients
                        Receiving Dialysis

                Journal: Journal of the American Society of Nephrology

           Manuscript ID JASN-2021-05-0611.R2

       Manuscript Type: Research Letters

  Date Submitted by the
                        24-May-2021
                Author:

Complete List of Authors: Anand, Shuchi; Stanford University, Department of Medicine
                          (Nephrology)
                          Montez-Rath, Maria; Stanford University, Department of Medicine
                          (Nephrology)
                          Han, Jialin; Stanford University, Department of Medicine (Nephrology)
                          Garcia, Pablo; Stanford University, Department of Medicine (Nephrology)
                          Cadden, LinaCel; Ascend Clinical Laboratory
                          Hunsader, Patti; Ascend Clinical Laboratory
                          Kerschmann, Russell; Ascend Clinical Laboratory
                          Beyer, Paul; Ascend Clinical Laboratory
                          Dittrich, Mary ; US Renal Care
                          Block, Geoffrey; US Renal Care
                          Boyd, Scott; Stanford University, Department of Pathology
                          Parsonnet, Julie; Stanford University, Departments of Medicine
                          (Infectious Diseases and Geographic Medicine), and Epidemiology and
                          Population Health
                          Chertow, Glenn; Stanford University, Departments of Medicine
                          (Nephrology), and Epidemiology and Population Health

                          immunology, chronic dialysis, clinical nephrology, immunosuppression,
              Keywords:
                          COVID-19, Antibody Formation, renal dialysis, Vaccination

                        Journal of the American Society of Nephrology
Antibody Response to COVID-19 Vaccination in Patients Receiving Dialysis
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3              Authors: Anand, Shuchi; Montez-Rath, Maria; Han, Jialin; Garcia, Pablo; Cadden, LinaCel; Hunsader,
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               Patti; Kerschmann, Russell; Beyer, Paul; Dittrich, Mary ; Block, Geoffrey; Boyd, Scott; Parsonnet, Julie;
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               Chertow, Glenn
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8              Title: Antibody Response to COVID-19 Vaccination in Patients Receiving Dialysis
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10             Running title: Antibody Response to COVID-19 Vaccination
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12             Manuscript Type: Research Letters
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15             Funders: Ascend Clinical Laboratory, (Grant / Award Number: )
16             National Institutes of Health, (Grant / Award Number: 'K24DK085446','R01DK127138')
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18             Financial Disclosure: CUST_FINANCIAL_DISCLOSURE :No data available. LC, PH, RK and PB are employed
19             by Ascend Clinical Laboratories. GC is on the Board of Satellite Healthcare, a not for profit dialysis
20             organization. S. Anand reports Research Funding from Applied Pragmatic Research Grant, from Satellite
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               healthcare; Honoraria from American Kidney Fund; and Scientific Advisor or Membership with i3C (ISN)
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               & CENCAM. M. Montez-Rath reports Research Funding from Sanofi. G. Block reports current
24             employment with US Renal Care; Consultancy Agreements with Kirin, Akebia, Keryx, Reata; Ownership
25             Interest in Ardelyx, Reata; Research Funding from Akebia, Ardelyx, GSK; Honoraria from Kirin, Amgen;
26             Scientific Advisor or Membership with Reata, Kirin, Ardelyx, CJASN; and Other Interests/Relationships as
27             prior member on ESC of KDIGO, prior Medical Director at Davita, and prior employment with Reata. G.
28             Chertow reports Consultancy Agreements with Akebia, Amgen, Ardelyx, Astra Zeneca, Baxter, Cricket,
29             DiaMedica, Gilead, Miromatrix, Reata, Sanifit, Unicycive, Vertex; Ownership Interest in Ardelyx,
30             CloudCath, Durect, DxNow, Eliaz Therapeutics, Outset, Physiowave, PuraCath; Research Funding from
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               NIDDK, NIAID; Scientific Advisor or Membership as Co-Editor of Brenner & Rector's The Kidney (Elsevier);
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33             an dOther Interests/Relationships via DSMB service, NIDDK, Angion, Bayer, and ReCor. S. Boyd reports
34             Consultancy Agreements with Regeneron, Sanofi, Novartis; Ownership Interest in AbCellera, CareDx;
35             Honoraria from NIH, Karolinska Institutet; Patents and Inventions from U.S. Patent No. 9,068,224,
36             licensed to Adaptive Biotechnologies; and Scientific Advisor or Membership with Food Allergy Fund. R.
37             Kerschmann reports Consultancy Agreements with Ascend Clinical, Grail, Inc., Notable Labs, and Octave
38             Bioscience. M. Dittrich is employed by US Renal Care; and has Ownership Interest in US Renal Care,
39             Signify Health, and Multiple dialysis units.
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42             Study Group/Organization Name: CUST_STUDY_GROUP/ORGANIZATION_NAME :No data available.
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44             Study Group Members’ Names: CUST_STUDY_GROUP_MEMBERS :No data available.
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46             Total number of words: 886
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48             Abstract: DOCUMENT_ABSTRACT :No data available.
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Antibody Response to COVID-19 Vaccination in Patients Receiving Dialysis
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     Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version
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3                Antibody Response to COVID-19 vaccination in Patients Receiving Dialysis
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7    Authors:
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9    Shuchi Anand, MD, Department of Medicine (Nephrology), Stanford University
10   Maria E. Montez-Rath, PhD, Department of Medicine (Nephrology), Stanford University
11   Jialin Han, MS, Department of Medicine (Nephrology), Stanford University
12   Pablo Garcia, MD, Department of Medicine (Nephrology), Stanford University
13   LinaCel Cadden, CLS, Ascend Clinical Laboratory
14   Patti Hunsader, CLS, Ascend Clinical Laboratory
15
     Russell Kerschmann, MD, Ascend Clinical Laboratory
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17   Paul Beyer, MBA, Ascend Clinical Laboratory
18   Mary Dittrich, MD, US Renal Care
19   Geoffrey A Block, MD, US Renal Care
20   Scott D Boyd, MD, PhD, Department of Pathology, Stanford University
21   Julie Parsonnet, MD, Departments of Medicine (Infectious Diseases and Geographic Medicine), and
22   Epidemiology and Population Health, Stanford University
23
     Glenn M Chertow, MD, Departments of Medicine (Nephrology), and Epidemiology and Population
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25   Health, Stanford University
26
27   Corresponding author:
28   Shuchi Anand, MD
29   777 Welch Road Suite DE
30   Palo Alto California, US 94304
31   sanand2@stanford.edu
32   ph: 650 725 2207
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37   Running title: Antibody Response to COVID-19 Vaccination
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39   Keywords: immunology, chronic dialysis, clinical nephrology, immunosuppression, COVID-19, antibody
40   formation, renal dialysis, vaccination
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44   Word count: 961
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Antibody Response to COVID-19 Vaccination in Patients Receiving Dialysis
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               Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version
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3              Data from hepatitis B1 and influenza vaccination2 studies indicate blunted and foreshortened response to
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5              immunization in patients receiving dialysis, raising the worrisome possibility that the SARS-CoV-2
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               vaccine may also yield lower efficacy in this population. We report early data on receptor binding domain
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10             (RBD) seroconversion and semi-quantitative IgG values post vaccination in 1140 patients without, and
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12             493 patients with, pre-vaccination SARS-CoV-2 RBD antibody. Among the subset who completed two
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14             doses of vaccination, we assess rates of and risk factors for absent or attenuated response.
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17             Our study was conducted in partnership with the dialysis network US Renal Care and Ascend Clinical
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19             Laboratory. In the first two weeks of January 2021—prior to widespread vaccine roll out—we tested
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21             SARS-CoV-2 antibody status of 21,570 patients receiving dialysis. From among the 17,390 seronegative
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23             patients in January 2021, we used systematic sampling with fraction intervals stratified by age to
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25             randomly select 4,346 persons to follow with monthly SARS-CoV-2 serology assays, in association with
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27             type and date of vaccination(s) (see Supplemental Methods for assay characteristics and sample size
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29             details). We also followed 540 patients seropositive as of January 2021, and any additional patients who
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31             seroconverted prior to vaccination (see Supplemental Figure 1 for “seropositive prior to vaccination”
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               and “seronegative prior to vaccination” cohorts). We tested remainder samples using the Siemens’ total
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36             RBD Ig assay, which measures IgG and IgM antibodies, in January 2021 and monthly thereafter in the
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38             seronegative prior to vaccination cohort. Subsequent to a positive total RBD Ig result in the seronegative
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40             and among all patients in the seropositive prior to vaccination cohorts, we tested samples only using a
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42             semiquantitative Siemens RBD IgG assay monthly.
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45             We evaluated response over three time periods: 14 days post the Johnson and Johnson vaccine or second dose of the
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51             mRNA platform vaccines or (fully vaccinated). We classified responses as absent total RBD Ig antibody,
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53             absent semiquantitative IgG antibody (index value
Page 4 of 22

     Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version
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3    As of April 2021, 1140 patients on dialysis without prior SARS-CoV-2 antibodies and 493 patients with
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5    extant antibodies received a dose of vaccine (Supplemental Table 1). In the seronegative prior to
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     vaccination cohort, 9%, 35%, and 77% of patients had RBD IgG values ≥10 in the early post-vaccine,
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10   partially vaccinated, and fully vaccinated groups, respectively. In the seropositive cohort, the proportions
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12   were higher in the earlier periods (38%, 55%, and 81%, respectively). Median IgG levels were lower in
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14   the seronegative compared with the seropositive cohorts (Figure 1). Among the seronegative prior to
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16   vaccine cohort, median IgG index values post vaccination were 0.5 (25th, 75th percentile 0.5, 0.5), 3.2 (0.5,
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18   27.8), and 41.6 (11.3, 150.0) in the early, partially and fully vaccinated periods respectively. Among the
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20   seropositive prior to vaccine cohorts, median IgG index values post vaccination were 0.5 (0.5, 7.6), 1.1
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22   (0.5, 102.3), 15.3 (1.2, 150), and 150 (23.2, 150) in the prior to, early, partially and fully vaccinated
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24   periods respectively.
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27   We assessed vaccine response among fully vaccinated patients a median of 29 (25th, 75th percentile 22,
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29   39) days post vaccine completion. Of the 610 fully-vaccinated patients, 27 (prevalence 4.4% [95% CI 3.
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31   1, 6.4%]), 21 (3.4% [2.4, 5.2%]), and 87 (14.3% [11.7, 17.3%]) had absent total RBD, absent
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     semiquantitive IgG, and attenuated IgG response, respectively. The prevalence of absent or attenuated
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36   response was similar in seronegative and seropositive cohorts (Figure 1). Supplemental Tables 2 and 3
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38   show results stratified by age and pre-vaccination seropositive status and sensitivity analysis assessing
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40   responses at least 28 or more days post vaccine completion.
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     Non-white race and Hispanic ethnicity were associated with a lower risk of absent or attenuated response;
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45   longer dialysis vintage and lower serum albumin were associated with a higher risk (Supplemental Table
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47   4). Median RBD IgG levels were modestly lower for Pfizer than for the Moderna vaccine (Supplemental
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49   Figure 2a & b), and correspondingly, there was a modestly higher prevalence of absent or attenuated
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51   response in the subgroup receiving Pfizer compared with Moderna (Supplemental Table 5). Data on the
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53   Johnson and Johnson vaccination were sparse (n=18), but suggested higher prevalence of absent response
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               Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version
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3              among fully-vaccinated patients (83.3% [95% CI: 59.1, 94.5%] without detectable response on total RBD
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5              or RBD IgG, and 5.6% [0.8, 30.7%] attenuated IgG).
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8              Limitations of the study include the modest sample size. Our assessment was performed during the early
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10             phase of vaccine roll out, a time period during which elderly or persons with comorbidities were
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12             prioritized. Estimates for vaccine response may improve over time as a broader patient population
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               receives vaccination, although 40% of our cohort was < 65 years of age indicating reasonable
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17             representativeness by age of patients receiving dialysis. Antibody titers are only one way to assess
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19             immunologic response to vaccination. We do not yet know whether a measurable antibody response
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21             correlates with protection from infection.
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24             In summary, in a well-characterized cohort of patients receiving dialysis with and without prior evidence
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26             of infection with SARS-COV-2, more than one in five demonstrated an attenuated immune response after
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28             vaccination with one of three vaccines granted emergency use authorization by FDA. There were
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30             differences in responses by vaccine type that require further study. Although median IgG titers are higher
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32             among patients with evidence of prior SARS-CoV-2 infection compared with those without, rates of
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34             absent- or attenuated response to vaccination were similar between the two groups. These data are in line
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36             with some recently published reports4,5, and portend the critical need for studies evaluating real-world
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38             efficacy of vaccination in the end-stage kidney disease population and other vulnerable populations with
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               chronic diseases, and for trials evaluating modified schedules of vaccination.
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     Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version
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2
3    Disclosures:
4
5    LC, PH, RK and PB are employed by Ascend Clinical Laboratories. GC is on the Board of Satellite
6    Healthcare, a not for profit dialysis organization. S. Anand reports Research Funding from Applied
7    Pragmatic Research Grant, from Satellite healthcare; Honoraria from American Kidney Fund; and
8
     Scientific Advisor or Membership with i3C (ISN) & CENCAM. M. Montez-Rath reports Research
9
10   Funding from Sanofi. G. Block reports current employment with US Renal Care; Consultancy
11   Agreements with Kirin, Akebia, Keryx, Reata; Ownership Interest in Ardelyx, Reata; Research Funding
12   from Akebia, Ardelyx, GSK; Honoraria from Kirin, Amgen; Scientific Advisor or Membership with
13   Reata, Kirin, Ardelyx, CJASN; and Other Interests/Relationships as prior member on ESC of KDIGO,
14   prior Medical Director at Davita, and prior employment with Reata. G. Chertow reports Consultancy
15   Agreements with Akebia, Amgen, Ardelyx, Astra Zeneca, Baxter, Cricket, DiaMedica, Gilead,
16
     Miromatrix, Reata, Sanifit, Unicycive, Vertex; Ownership Interest in Ardelyx, CloudCath, Durect,
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18   DxNow, Eliaz Therapeutics, Outset, Physiowave, PuraCath; Research Funding from NIDDK, NIAID;
19   Scientific Advisor or Membership as Co-Editor of Brenner & Rector's The Kidney (Elsevier); an dOther
20   Interests/Relationships via DSMB service, NIDDK, Angion, Bayer, and ReCor. S. Boyd reports
21   Consultancy Agreements with Regeneron, Sanofi, Novartis; Ownership Interest in AbCellera, CareDx;
22   Honoraria from NIH, Karolinska Institutet; Patents and Inventions from U.S. Patent No. 9,068,224,
23   licensed to Adaptive Biotechnologies; and Scientific Advisor or Membership with Food Allergy Fund. R.
24
     Kerschmann reports Consultancy Agreements with Ascend Clinical, Grail, Inc., Notable Labs, and
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26
     Octave Bioscience. M. Dittrich is employed by US Renal Care; and has Ownership Interest in US Renal
27   Care, Signify Health, and Multiple dialysis units.
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29
30   Funding Support:
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32   Dr. Anand was supported by R01DK127138. Dr Chertow was supported by K24DK085446. Ascend
33   Clinical Laboratory supported the remainder plasma testing for SARS-CoV2 antibodies.
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               Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version
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3              References
4
5
6              1.     Edey M, Barraclough K, Johnson DW. Review article: Hepatitis B and dialysis. Nephrology
7                     (Carlton). 2010;15(2):137-145.
8              2.     Broeders NE, Hombrouck A, Lemy A, et al. Influenza A/H1N1 vaccine in patients treated by
9
                      kidney transplant or dialysis: a cohort study. Clin J Am Soc Nephrol. 2011;6(11):2573-2578.
10
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               3.     Anand S, Montez-Rath ME, Han J, et al. Serial SARS-CoV-2 Receptor-Binding Domain Antibody
12                    Responses in Patients Receiving Dialysis. Ann Intern Med. 2021.
13             4.     Grupper A, Sharon N, Finn T, et al. Humoral Response to the Pfizer BNT162b2 Vaccine in Patients
14                    Undergoing Maintenance Hemodialysis. Clin J Am Soc Nephrol. 2021.
15             5.     Attias P, Sakhi H, Rieu P, et al. Antibody response to the BNT162b2 vaccine in maintenance
16                    hemodialysis patients. Kidney Int. 2021.
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     Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version
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3    Figure 1. IgG responses following COVID19 vaccination among patients receiving dialysis
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33   In this figure, each marker represents an individual semiquantitative RBD IgG index value in the time
34   period related to vaccination. Blue circles represent persons who did not have evidence of SARS-CoV-2
35   infection prior to vaccination (seronegative); green markers represent persons who did have evidence of
36   SARS-CoV-2 infection prior to vaccination (seropositive). The overlying grey lines represent median
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     with interquartile range. We defined early post vaccination as within 14 days of first dose, partially
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39   vaccinated as between 14 days after first dose to 14 days post second dose (applicable to mRNA vaccines
40   only), and fully vaccinated as more than 14 days post second dose for Moderna and Pfizer, or post dose
41   for Johnson and Johnson. The IgG index values assay range is from 0.5 to 150 but index values > 1 are
42   considered reactive. In the seropositive prior to vaccination cohort, the RBD IgG value closest to
43   vaccination is graphed; otherwise for both cohorts, the value most proximal to the start of each time
44   period is graphed. Although 1140 and 493 patients were included in the two cohorts (since they received
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     at least one vaccine dose at the time of the study), all patients do not have values available for each time
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47   period, since these depend on the timing of the vaccination and the routine monthly blood draw. The
48   numbers above the figure show the numbers of persons with a result available in the seronegative and
49   seropositive cohorts for each time period.
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51   The table below provides estimates for prevalence of no seroconversion on the total RBD Ig assay, and
52   absent (index value < 1) and attenuated (1< index value < 10) semiquantitative RBD IgG, respectively.
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               Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version
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3                                                Supplemental Table of Contents
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7              Supplemental Methods
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9              Supplemental Table 1 Participant characteristics according to SARS-CoV-2 spike protein receptor
10             binding domain antibody status prior to vaccination
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12             Supplemental Table 2 Prevalence of absent or attenuated response among fully vaccinated individuals
13             overall and by age group, at least 14 days after completion of vaccine
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15             Supplemental Table 3 Prevalence of absent or attenuated response among fully vaccinated individuals
16             overall and by age group, at least 28 days after completion of vaccine
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               Supplemental Table 4 Risk factors for absent or attenuated response to SARS-CoV-2 vaccination in
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19             fully vaccinated patients receiving dialysis
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               Supplemental Table 5 Prevalence of absent or attenuated response among fully vaccinated individuals
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22             by vaccine type, at least 14 days after completion of vaccine*
23             Supplemental Figure 1 Study flowchart of participants
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25             Supplemental Figure 2a&b Semiquantitative IgG values in patients receiving Moderna (a) or Pfizer (b)
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3                               Antibody Response to COVID-19 vaccination in Patients on Dialysis
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12              Supplemental Methods                                                          p2
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14              Supplemental Table 1 Participant characteristics according to SARS-CoV-2 spike protein receptor
15              binding domain antibody status prior to vaccination                          p5
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17              Supplemental Table 2 Prevalence of absent or attenuated response among fully vaccinated individuals
18              overall and by age group, at least 14 days after completion of vaccine        p7
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20              Supplemental Table 3 Prevalence of absent or attenuated response among fully vaccinated individuals
21              overall and by age group, at least 28 days after completion of vaccine        p8
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23              Supplemental Table 4 Risk factors for absent or attenuated response to SARS-CoV-2 vaccination in
24              fully vaccinated patients receiving dialysis                                 p9
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26              Supplemental Table 5 Prevalence of absent or attenuated response among fully vaccinated individuals
27              by vaccine type, at least 14 days after completion of vaccine*                p10
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29              Supplemental Figure 1 Study flowchart of participants                         p11
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31              Supplemental Figure 2a&b Semiquantitative IgG values in patients receiving Moderna (a) or Pfizer (b)
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3    Supplemental Methods
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5    Our study was conducted in partnership with the dialysis network US Renal Care and Ascend Clinical
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7    Laboratory. Ascend Clinical tested remainder plasma of patients for SARS-CoV-2 antibody, and
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9    anonymized all patient demographic, comorbidity, and laboratory data prior to transfer to Stanford
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     University. The Institutional Review Board at Stanford University reviewed and approved the study.
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14   Sample size
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17   We selected 4,348 patients on follow from the 17,390 patients on dialysis without prior evidence of
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19   SARS-CoV-2 infection (as of January 2021) in US Renal Care network. To estimate sample size, we used
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21   previously published data on hepatitis B vaccination non-response, as available by age strata from
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23   Bruguera et al.1, who evaluated immune response in 270 patients. In this study, the rate of non-response
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25   among persons age 20-40, 40-60, and >60 years was 7%, 13%, and 35% respectively. Correspondingly,
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     our estimates of non-response among persons age 18-44, 45-64, ≥65 years was 5%, 15%, and 30%
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30   respectively. Estimating these proportions of non-response with an absolute precision of 2%, and
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32   oversampling by 15%, resulted in a sample size estimate of 4222 (see Table).
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34   Population and subpopulation sizes by age and number of patients required to obtain a prevalence estimate with the specified
35   absolute precision assuming and the specified proportion of non-response to the vaccine.
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37                 Proportion of
                                                                                  US Renal Care                            Over sample
      Age group   non-response to   Absolute precision   USRDS Population count                     Sample size required
38                    vaccine
                                                                                  Population size                            (15%)
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       18 to 44         5%                 2%                    60,540               2,871                 453               521
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       45 to 64        15%                 2%                   207,022               10,605               1,218              1,401
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43       ≥ 65          30%                 2%                   231,588               12,777               2,000              2,300
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45      Total                                                   499,150               26,253               3,671              4,222

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48   We used systematic sampling with fractional intervals. In systematic sampling the patients are selected
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     from the list using a fixed selection interval, calculated by dividing the total number of patients in the list
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     by the desired number (i.e., 17390/4222 = 4.1). We thus randomly selected one number between 1 and 4
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55   and then selected every 4th patient in the sampling frame sorted by zip code, age, sex and race. This
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3               resulted in a sample size of 4348 patients on dialysis; however two sampled patients seroconverted prior
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5               to vaccination, thus we followed 4346 patients from January 2021. This cohort comprised the
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                seronegative prior to vaccination cohort (see Supplemental Figure 1).
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10              In addition, since August 2020, we have followed 6551 patients among whom a subset seroconverted
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12              prior to vaccination (i.e., developed evidence of natural infection). All 540 patients seropositive as of
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                January 2021, and any additional patients who seroconverted prior to vaccination comprised the
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17              “seropositive prior to vaccination cohort” (see Supplemental Figure 1).
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19              Assay Characteristics: We tested remainder samples using the Siemens’ total RBD Ig assay, which
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                measures IgG and IgM antibodies, in January 2021 and monthly thereafter in the seronegative prior to
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24              vaccination cohort. This assay is reported by the manufacture to have 100% sensitivity and 99.8%
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26              specificity for tests performed ≥14 days after a positive reverse transcriptase polymerase chain reaction
27
28              test2; it has been validated independently with similar performance characteristics3,4. Subsequent to a
29
30              positive total RBD Ig result in the seronegative and among all patients in the seropositive prior to
31
32              vaccination cohorts, we tested samples only using a semiquantitative Siemens RBD IgG assay monthly.
33
34              The Siemens RBD IgG assay is semiquantitative two-step sandwich indirect chemiluminescent assay with
35
36              a manufacturer reported 95.6% (95% CI: 92.2-97.8%) sensitivity and 99.9% (95% CI 99.6-99.9%)
37
38              specificity for tests performed ≥21 days post positive reverse transcriptase polymerase chain reaction test.
39
40
                An index value ≥1.0 is considered reactive and an index value of 150 is the upper limit of quantification.
41
42
43              We classified responses as absent total RBD Ig antibody, absent semiquantitative IgG antibody (index
44
45              value 1:80 7,8. Finally, in an
55
56              external study of patients with inflammatory bowel disease on biologic therapy post SARS-CoV-2
57
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Page 14 of 22

1
2
3    vaccination, 22 of 26 patients with inflammatory bowel disease and all 14 healthcare workers who had
4
5    completed vaccination exhibited semiquantitive titers with index values > 109.
6
7
8    Correlates: We extracted electronic health record data on age, sex, self-reported race and ethnicity, years
9
10   with end-stage kidney disease, diabetes status, and nursing home status as available. We also extracted
11
12   monthly laboratory results for serum albumin—a valid surrogate of health status10-13. We used the
13
14
     laboratory value closest to the date prior to vaccination.
15
16
17   Statistical analysis: We present demographic data and laboratory values using proportions, mean ±
18
19   standard deviation (SD) or median, 25th-75th percentile, as applicable. We present the range of
20
21
     semiquantitative IgG titers by vaccine period in the seronegative and seropositive prior to vaccination
22
23
24   cohorts. Among patients in the ‘fully vaccinated’ window, we present prevalence and 95% confidence
25
26   intervals, overall and by age group, of absent or attenuated antibody response in the overall, and
27
28   seronegative and seropositive prior to vaccination cohorts. Finally, we present these parameters by
29
30   vaccine type. In a sensitivity analysis, we assessed prevalence of absent or attenuated antibody response
31
32   after at least 28 days post completion of vaccination. Among participants who completed vaccination, we
33
34   used a Poisson model with robust standard error to assess risk factors for absent or attenuated antibody
35
36   response. Data missingness was low (5%), and exclusively due to missing self-reported race/ethnicity. We
37
38   therefore present results of a complete case analysis inclusive of both cohorts, in which we a priori
39
40
     selected the following correlates to test: age, sex, race/ethnicity, diabetes status, vintage of ESKD, and
41
42
43   serum albumin. We considered statistical significance at 
Page 15 of 22

1
2
3               Supplemental Table 1 Participant characteristics according to SARS-CoV-2 spike protein receptor
4
                binding domain antibody status prior to vaccination
5
6                                             RBD Seronegative prior to            RBD Seropositive prior to
7
                                                    vaccination                         vaccination
8
9                                                     N=1140                               N=493
10
                 Age (years)
11
12               18 to 44                              67 (5.9)                                41 (8.3)
13               45 to 64                             369 (32.3)                             175 (35.5)
14               65 to 79                             491 (43.1)                             198 (40.2)
15
                 ≥ 80                                 213 (18.7)                              79 (16.0)
16
17               Gender
18               M                                    685 (60.1)                             280 (56.8)
19               F                                    455 (39.9)                             213 (43.2)
20
                 Race and Ethnicity
21
22               Hispanic                             225 (19.7)                             116 (23.5)
23               Non-Hispanic white                   431 (37.8)                             169 (34.3)
24               Non-Hispanic Black                   245 (21.5)                             111 (22.5)
25
26               Non-Hispanic Other                   184 (16.2)                              80 (16.2)
27               Missing                               55 (4.8)                                17 (3.5)
28               Region
29               Northeast                            161 (14.1)                              59 (12.0)
30
31
                 South                                314 (27.6)                             120 (24.3)
32               Midwest                              194 (17.0)                              85 (17.2)
33               West                                 471 (41.3)                             229 (46.5)
34               ESKD Vintage (years)
35
Page 16 of 22

1
2
3     Moderna                           716 (62.8)                             341 (69.2)
4
      Pfizer-BNT                        390 (34.2)                             131 (26.6)
5
6     Johnson & Johnson                  34 (3.0)                               21 (4.2)
7
8    RBD-receptor binding domain, ESKD-end-stage kidney disease
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Page 17 of 22

1
2
3               Supplemental Table 2 Prevalence of absent or attenuated response among fully vaccinated individuals overall and by age group, at least 14 days
4
                after completion of vaccine*
5
6                                                   Seronegative prior to vaccination cohort                                 Seropositive prior to vaccination
7
8                                                                   N=519                                                                 N=91
9
10                                No seroconversion on       No detectable response on                                No detectable response on
11
                                                                                               Attenuated IgG                                       Attenuated IgG
                                      total RBD Ig                  RBD IgG                                                  RBD IgG
12
13               Age (years)
14               18 to 44             9.1% (2.8, 30)                 0% (0, 0)                4.5% (0.6, 26.2)               0% (0, 0)                 0% (0, 0)
15
                 45 to 64            6.8% (3.5, 13.1)             0.9% (0.1, 5.8)             9.4% (5.3, 16.2)            5.6% (0.8, 31.2)          5.6% (0.8, 31.2)
16
17               65 to 79             5.5% (3.2, 9.3)             3.8% (2.0, 7.2)            16.5% (12.3, 21.8)           8.3% (3.1, 20.4)         12.5% (5.7, 25.4)
18               ≥ 80                 2.8% (1.0, 7.2)             2.8% (1.0, 7.2)            18.1% (12.6, 25.2)           8.7% (2.1,29.3)          13.0% (4.2, 33.9)
19               Overall             5.2% (3.6. 7.5)              2.7% (1.6, 4.5)            14.8% (12.0, 18.2)           7.7% (3.7, 15.4)         11.9% (6.0, 19.2)
20
21              *Data are percentage (95% CI) obtained at least 14 days after two doses of either Moderna or Pfizer-BNT vaccines and 14 days after a single dose
22              of Johnson & Johnson vaccine. Median duration since completion of vaccination was 29 days [25th, 75th percentile: 22, 39 days]. We performed
23
                total RBD Ig among all patients in the seronegative prior to vaccination cohort; once a patient seroconverted, we performed the semiquantitative
24
25              RBD IgG monthly. We performed semiquantitative RBG IgG only among patients known to have a positive total RBD Ig prior to vaccination
26              (seropositive prior to vaccination cohort).
27
28
29
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31
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Page 18 of 22

1
2
3
4
5    Supplemental Table 3 Prevalence of absent or attenuated response among fully vaccinated individuals overall and by age group, at least 28 days
6    after completion of vaccine*
7
8                                        Seronegative prior to vaccination cohort                                Seropositive prior to vaccination
9
10                                                       N=355                                                                 N=48
11
12                     No seroconversion on       No detectable response on                                No detectable response on
                                                                                    Attenuated IgG                                       Attenuated IgG
13                         total RBD Ig                  RBD IgG                                                  RBD IgG
14
15    Age (years)
16    18 to 44            7.1% (1, 37.2)                   0% (0, 0)                   0% (0, 0)                  0% (0, 0)                0% (0, 0)
17    45 to 64             1.4% (0.2, 9)                   0% (0, 0)               14.9% (8.4, 24.9)              0% (0, 0)             10% (1.3, 48.1)
18    65 to 79            3.8% (1.7, 8.2)               3.1% (1.3, 7.4)           24.5% (18.4, 31.8)           13% (4.1, 34.3)         17.4% (6.5, 38.9)
19
20    ≥ 80                1.9% (0.5, 7.1)              4.6% (1.9, 10.7)           25.0% (17.7, 34.0)              0% (0, 0)            14.3% (3.5, 43.7)
21    Overall             2.5% (1.3, 4.6)              3.2% (1.9, 5.5)            20.8% (17.1, 25.1)           6.3% (2.0, 18.1)        14.6% (7.0, 28.0)
22
23   *Data are percentage (95% CI) obtained at least 28 days after two full doses of either Moderna or Pfizer-BNT vaccines and 28 days after a single
24   dose of Johnson & Johnson vaccine. We performed total RBD Ig among all patients in the seronegative prior to vaccination cohort; once a patient
25   seroconverted, we performed the semiquantitative RBD IgG monthly. We performed semiquantitative RBG IgG only among patients known to
26   have a positive total RBD Ig prior to vaccination (seropositive prior to vaccination cohort). Among both cohorts the prevalence of no
27
     seroconversion on total RBD Ig, no detectable response on RBD IgG and attenuated IgG was 2.8% (1.5, 5.2), 2.8% (1.5, 5.2) and 72.7 (67.8, 77.1)
28
29
     respectively.
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Page 19 of 22

1
2
3               Supplemental Table 4 Risk factors for absent or attenuated response to SARS-CoV-2 vaccination in fully vaccinated patients receiving dialysis
4
5                                                                        Risk Ratio^
6
                 Age (years)
7
8
Page 20 of 22

     Supplemental Table 5 Prevalence of absent or attenuated response among fully vaccinated individuals by vaccine type,
1
     at least 14 days after completion of vaccine*
2
3                                                 Fully vaccinated
4
5                                                      N=610
6
7                                      No detectable
8                                  response on total RBD        Attenuated IgG
9                                       or RBD IgG
10
11    Moderna               353        2.8% (1.5, 5.2)         9.1% (6.5, 12.5)
12    Pfizer-BNT            239       9.6% (6.5, 14.1)        22.6% (17.7, 28.3)
13    Johnson & Johnson      18      83.3% (59.1, 94.5)        5.6% (0.8, 30.7)
14
15
16
17   *Data are percentage (95% CI) obtained at least 14 days after two full doses of either Moderna or Pfizer-BNT vaccines
18   and 14 days after a single dose of Johnson & Johnson vaccine. We performed total RBD Ig among all patients in the
19   seronegative prior to vaccination cohort; once a patient seroconverted, we performed the semiquantitative RBD IgG
20   monthly. We performed semiquantitative RBG IgG only among patients known to have a positive total RBD Ig prior to
21
22
     vaccination (seropositive prior to vaccination cohort).
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Page 21 of 22

        Supplemental Figure 1 Study flowchart of participants
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*Seroconversion between August to January
49
^Semiquantitative IgG titer 14 days post second dose
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Page 22 of 22

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2    Supplemental Figure 2a&b: Semiquantitative IgG values in patients receiving Moderna (a) or Pfizer-BNT (b)
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Page 23 of 22

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