The natural silk spinning process - A nucleation-dependent aggregation mechanism?

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Eur. J. Biochem. 268, 6600–6606 (2001) q FEBS 2001

The natural silk spinning process
A nucleation-dependent aggregation mechanism?
Guiyang Li1, Ping Zhou1, Zhengzhong Shao1, Xun Xie1, Xin Chen1, Honghai Wang2, Lijuan Chunyu2 and
Tongyin Yu1
1
The Key Laboratory of Molecular Engineering of Polymers, Ministry of Education, Macromolecular Science Department and
2
Institute of Genetics, Fudan University, Shanghai, China

The spinning mechanism of natural silk has been an open              thermodynamically unfavorable association of b sheet unit,
issue. In this study, both the conformation transition from          i.e. the formation of a nucleus or seed; (b) once the nucleus
random coil to b sheet and the b sheet aggregation growth of         forms, further growth of the b sheet unit becomes
silk fibroin are identified in the B. mori regenerated silk          thermodynamically favorable, resulting a rapid extension
fibroin aqueous solution by circular dichroism (CD) spectro-         of b sheet aggregation. The aggregation growth follows a
scopy. A nucleation-dependent aggregation mechanism,                 first order kinetic process with respect to the random coil
similar to that found in prion protein, amyloid b (Ab)               fibroin concentration. The increase of temperature accel-
protein, and a-synuclein protein with the conformation               erates the b sheet aggregation growth if the b sheet seed is
transition from a soluble protein to a neurotoxic, insoluble b       introduced into the random coil fibroin solution. This work
sheet containing aggregate, is a novel suggestion for the            enhances our understanding of the natural silk spinning
silk spinning process. We present evidence that two steps            process in vivo.
are involved in this mechanism: (a) nucleation, a rate-
limiting step involving the conversion of the soluble random         Keywords: silk fibroin; spinning mechanism; conformation
coil to insoluble b sheet and subsequently a series of               transition; nucleation-dependent; CD spectroscopy.

A number of studies have been reported silk processing               formation by extensional flow [14]. But the mechanism
techniques [1 –11], including those of spider and silkworm.          involved in the conversion of a hydrogel of silk fibroin in the
However, the controlling factors that determine the                  silk I state into the silk II state remains unresolved.
efficiency of silk spinning at ambient temperature and                  Recently, a nucleation-dependent aggregation (polymer-
normal pressure remains unclear [6 –8]. The silk fibroin in          ization or crystallization) model has been proposed to
the silkworm gland possesses relatively low viscosity in a           account for the formation of insoluble fibers of b proteins in
concentrated solution as a result of its storage in a liquid         a range of neurodegenerative diseases. These involve the
crystalline state before spinning [7 –9]. This is coupled with       conversion of the endogenous prion PrPc into the pathogenic
a low critical shear rate for inducing crystallization in            PrPSc [15], Ab amyloid fibril formation from amyloid b
aqueous solution [10], as well as the low draw ratios for the        (Ab) protein [16], and a-synuclein fibrillogenesis [17]. It
production of uniaxially aligned fibrous structures [11].            has been shown in these studies that the formation of an
Theoretical elucidation of the mechanism for the natural silk        insoluble fiber is a two-phase process with an initial
spinning process has implications for material science,              nucleation phase in which the formation of nuclei is limited
particularly in the design of engineering polymers.                  by the time taken for the protein to undergo conformation
   The primary sequence of silk fibroin of the B. mori               changes as well as the association of converted protein, and
silkworm predominantly consists of the -(Gly-Ala-Gly-Ala-            then an aggregation growth phase following first order
Gly-Ser)8- motif [12]. It has been demonstrated that two             kinetics with respect to the protein concentration once
types of conformations exist in the silk fibroin: silk I, a          nuclei are formed. This model has a number of interesting
mainly coiled chain conformation in the present silk gland,          features. Firstly, the aggregation process is a nucleation-
and silk II which is formed by regularly aligned crystalline b       dependent process that could be induced by the preformed
sheet in the silk fibers [7]. Previous studies have suggested        aggregates or nuclei. Secondly, in whole propagation the
that the b sheet conformation can be induced in silkworm             nucleation of orderly aligned nuclei is a rate-limiting step.
fibroin by a stretching force [13], and the formation of spider      Thirdly, the aggregation growth follows a first order
dragline silk also involves a stress-induced b sheet                 kinetics. Lastly, the conformation adapted by the protein
                                                                     after conversion is less stable thermodynamically than its
                                                                     precursor, but the formation of more stable aggregates
Correspondence to P. Zhou, The Key Laboratory of Molecular           compensates the energy required by the conversion and the
Engineering of Polymers, Ministry of Education, Macromolecular       nucleation process [15]. In this work, we suggest that the
Science Department and Institute of Genetics, Fudan University,      spinning process of natural silk, a structural protein, may
Shanghai 200433, China. Fax: þ 86 21 65640293,                       also adopt such a process.
Tel: þ 86 21 65642866, Email: pingzhou@fudan.edu.cn                     As the regenerated silk fibroin (prepared in Experimental
(Received 4 July 2001, revised 5 October 2001, accepted 19 October   procedures) in aqueous solution has a similar structure to the
2001)                                                                concentrated silk fibroin in the gland of silkworm [18], the
q FEBS 2001                                                 Viewing into silk fibroin conformation transition (Eur. J. Biochem. 268) 6601

regenerated silk fibroin is adopted in this study to serve as an            of 0.1 mg·mL21 silk fibroin solution by repeatedly injecting
ideal in vitro model system for elucidating the details of the              it through the aperture of an 0.8-mm diameter tube,
silk spinning process in vivo. The conformation transitions                 mimicking the duct in the natural silk spinning process. The
of the silk fibroin were investigated by CD spectroscopy,                   resulting solution was shown contain a mixture of random
which is an effective tool in the characterization of protein               coil and b sheet conformations (Fig. 1, curve d). Both
conformation transition [19,20]. The effect of temperature                  methods produce clear seed solutions and neither crystals
on the conformation transition was also investigated.                       nor precipitates formed in all measured solutions during the
                                                                            CD experiments.
E X P E R I M E N TA L P R O C E D U R E S
Sample preparation                                                          Circular dichroism measurement
Raw silk was extracted from B. mori cocoon and degummed                     The experiments were conducted using a Jasco J-715 spectro-
in boiling aqueous Na2CO3 (0.5%, w/v) solution for 0.5 h.                   polarimeter equipped with RTE bath/circulator (NESLAB
The regenerated silk fibroin solution was prepared by                       RTE-111) and purged with N2 gas at a flow-rate of
dissolving the degummed silk into a 9.3 M LiBr solution for                 3 –5 mL·min21. The spectra were recorded from 190 to
1 h at room temperature (22 ^ 1 8C). This solution was                      250 nm with a resolution of 0.2 nm and accumulation of six
dialyzed against deionized water for 3 days to remove LiBr                  scans. The scan speed was 100 nm·min21 and the response
and insoluble material was removed with a medium rate                       time was 0.25 s. Samples of the 0.1 mg·mL21 and
qualitative filter paper in a triangle funnel. The resulting                0.01 mg·mL21 solutions were stored in 0.1-cm and 1-cm
solution has a concentration of
6602 G. Li et al. (Eur. J. Biochem. 268)                                                                            q FEBS 2001

at < 195 nm, confirming the predominance of the random             increase of both seed and silk fibroin concentrations
coil conformation [22]. With increasing time, the Cotton           increases the rate of the conversion of random coil to b
effect is gradually replaced by a positive one at 197 nm,          sheet and accelerates markedly the formation of b sheet
while a negative peak at 217 nm increases simultaneously.          aggregates.
Both of the Cotton effects at positive 197 nm and negative
217 nm are characteristics of a b sheet [22]. In short,
Fig. 2A,B shows that a transition from random coil to b
sheet takes place and the transition is much faster in seeded      First order aggregation growth mechanism
solution than that in seed-free solution, for instance, the        Because the aggregation growth process involves transition
seed-free solution takes 74 h (curve 4 in Fig. 2A) to reach        of one conformation to another once nucleation is
the same level by 20% seeded solution within 6 h (curve            completed, the process can be expressed as:
20 in Fig. 2B). Note that leaving the freshly prepared seed-
free solution (0.1 mg·mL21) to stand for a long period of                k
                                                                   Acoil ÿ! Ab                                                 ð2Þ
time (over 1 month) results in the formation of precipitates
that were shown to have b sheet conformation by Raman              in which the reactant is in a random coil conformation and
spectroscopy (Fig. 3). The peaks at 1087, 1234, 1266               the product is in a b sheet conformation. For first order
and 1665 cm21 in Fig. 3 arise from the silk II (b sheet            kinetics:
conformation), and the weak absorption at 1109 cm21                d½AŠcoil
implies the existence of small amount of silk I (random coil                ¼ 2k½AŠcoil                                        ð3Þ
or a helical conformation) [23]. The peak at 1444 cm21               dt
[d(CH2) scissoring] is independent of silk fibroin confor-         and [A]/[A]0 takes the form
mation [24].
   In our CD spectroscopy, the ellipticity is normalized           ½AŠ/½AŠ0 ¼ ½AŠcoil /ð½AŠcoil þ ½AŠb Þ                       ð4Þ
using Eqn (1):                                                     where [A]coil and [A]b are the concentration of the random
                                                                   coil and b sheet conformation, respectively, the logarithmic
½QŠnor       obs      0         max      0
   217 ¼ ð½QŠ217 ÿ ½QŠ217 Þ=ð½QŠ217 ÿ ½QŠ217 Þ              ð1Þ    form of (Eqn 3) becomes
where  ½QŠ0217  is the original ellipticity at 217 nm during the     
                                                                   ln ½AŠcoil /ð½AŠcoil þ ½AŠb Þ ¼ 2kt                      ð5Þ
measurement in the random coil solution, ½QŠobs       217 is the
observed ellipticity and ½QŠmax 217 is the maximum ellipticity     From the molar ellipticity shown in Fig. 1, the random coil
observed. Therefore, the correlation between normalized            has a weak absorption at 217 nm, whereas the b sheet
ellipticities at 217 nm and the time course for the seed-free      conformation has a strong absorption. Because the ellipticity
silk fibroin solution and various seeded solutions are shown       at 217 nm is proportional to the concentration of the b sheet
in Fig. 4. Note that a lag time exists in seed-free solution.      conformation:
During this lag time no b sheet conformation is observed
(Fig. 4A, inset, B). Small but undetectable amounts of b           ½AŠb =ð½AŠcoil þ ½AŠb Þ
sheet (as nuclei) may be built up during this period.
However, this slow nucleation step can be bypassed by the           ¼ ð½QŠobs      0         max      0
                                                                          217 2 ½QŠ217 Þ=ð½QŠ217 2 ½QŠ217 Þ
introduction of exogenous nucleus or seeds. As a conse-
                                                                    ¼ ½QŠnor
                                                                         217                                                   ð6Þ
quence of seeding, the lag time is eliminated (W curve in
Fig. 4A). The half-life time (t1/2) for the disappearance of       Thus, a linear relationship exists between 2ln(1 2 ½QŠnor
                                                                                                                         217 )
random coil maintains at 64, 32 and 9 h for 0, 5 and 20%           and t:
seeded solutions, respectively. It is shown (Fig. 4B) that the
                                                                   2 lnð1 2 ½QŠnor
                                                                               217 Þ ¼ kt                                      ð7Þ
                                                                   Because   ½QŠnor
                                                                                217   is available from the CD experiment for a
                                                                   series of fibroin solution, we put these ½QŠnor217 values into
                                                                   Eqn (7) and obtained the curves of –ln(1 2 ½QŠnor   217 ) vs. t.
                                                                   Figure 5 clearly shows a linear relationship between
                                                                   2 ln(1 2 ½QŠnor217 ) and t, demonstrating that the b sheet
                                                                   aggregation growth process is first-order with respect to the
                                                                   random coil concentration for both the seed-free and seeded
                                                                   solutions. For these plots, the determined slopes are
                                                                   approximately identical, indicating that the reaction
                                                                   constant k remains the same at a given temperature after
                                                                   nucleation, and the observed differences in the intercepts are
                                                                   attributed to the original differences in seed addition.
                                                                      The effect of temperature on the conformation transition
                                                                   process was also probed and the results are shown in Fig. 6.
                                                                   From CD spectra shown in Fig. 6A, only a small change was
                                                                   observed in seed-free solutions despite increasing tempera-
                                                                   ture up to 95 8C, but the transition process sped up
Fig. 3. Raman spectrum of the aggregate precipitate of silk        considerably once the solution was seeded under the same
fibroin.                                                           temperature conditions.
q FEBS 2001                                               Viewing into silk fibroin conformation transition (Eur. J. Biochem. 268) 6603

Fig. 4. Change in normalized ellipticity [u] at 217 nm with time. The inserted illustrations in (A) show the early stage of seed-free (B) and 20%
seeded (W) solutions in the 0.1 mg·mL21 silk fibroin solution. (A) show the effect of seeding on the b sheet formation speed (B, seed-free, P, 5%
seeded, W, 20% seeded). (B) reveals a slower b sheet formation speed in a lower silk fibroin concentration with 20% seed addition (O, 0.01 mg·mL21
silk fibroin solution, W, 0.1 mg·mL21 silk fibroin)

DISCUSSION                                                                 We suggest that either a very small quantity of b sheet
                                                                           aggregates are formed but remain highly unstable or the
The results presented above suggest that silk fibroin                      amounts of b sheet aggregates formed during this time are
solutions show a typical nucleation-dependent aggregation                  too small to be detected. Thus, the bulk silk fibroin mainly
process with the following features: the transition of silk                remains in the random coil conformation. We suggest that
fibroin conformation from coiled chain to b sheet nuclei is                only when b sheet aggregates exceed a given critical size
initiated by addition of b sheet seeds. In the absence of                  after a lag time period or upon addition of exogenous b sheet
added seed, a lag time exists because the spontaneous                      seeds, does further growth become spontaneous, resulting in
conversion of coiled chain to b sheet is slow. The b sheet                 the formation of large amounts of b sheets and finally the
aggregation growth process follows first order kinetics once               appearance of the insoluble material after long time
nuclei have formed, and increasing temperature favors the                  aggregation. In other words, the nucleation step involves
conformation transition once seeded solutions have been                    the transition of random coil to b strand and the formation of
added. These features are similar to the characteristics of                ordered b sheet association in the silk fibroin solution,
prions, amyloid b (Ab) protein, and a-synuclein protein                    whereas b sheet growth is based on the b sheet nucleus
[17,25–32].                                                                formation. It has been reported that the dependence of molar
   As seen from the inserted illustration in Fig. 4A, the                  ellipticity on the protein concentration serves as an indicator
conformation transition in seed-free silk fibroin solution                 of the extent of intermolecular aggregation [33], otherwise
cannot be detected by CD at the initial stage (within < 8 h).              it suggests an intramolecular aggregation if the molar

Fig. 5. Linear plots of 2ln(1 2 [u]217) vs. time
course for 0.1 mg·mL21 silk fibroin solutions
with different seed-additions. The ellipticities
were normalized and earlier parts were cut off
before 10 h because of the nucleation process. (A)
Seed-free, (B) 5% seeded, (C) 20% seeded, (D) a
repeatedly injected solution. The values in the
brackets are the errors and R is the regression
factor.
6604 G. Li et al. (Eur. J. Biochem. 268)                                                                                  q FEBS 2001

                                                                       Fig. 7. CD spectra of different silk fibroin concentration with 20%
                                                                       seed addition after 233 h incubation. (a) 0.1 mg·mL21 silk fibroin
                                                                       solution; (b) 0.01 mg·mL21 silk fibroin solution.

                                                                       217 nm (see Fig. 7). Thereby this concentration-dependent
                                                                       molar ellipticity indicates that intermolecular aggregation
                                                                       occurs in the aggregation growth of silk fibroin.
                                                                          It has been shown that the rate of formation of a b sheet
                                                                       nucleus, or seed, is slow because of unfavorable association
                                                                       equilibrium rather than the intrinsically slow association
                                                                       rates [23]. Therefore, it is necessary to understand the
                                                                       energy difference between the reactant and product. We
                                                                       calculated the energies of random coil and b strand (a
                                                                       fragment of (Gly-Ala-Gly-Ala-Gly-Ser)8 was adopted)
                                                                       using SYBYL software. The calculated formation energy is
                                                                       5.8 and 8.2 kJ·mol21 for the random coil and b strand,
                                                                       respectively, after energy minimization. The results reveal
                                                                       that the precursor, i.e. random coil, is more stable than the
                                                                       converted form, b extended strand, and the random coil
                                                                       requires 2.4 kJ·mol21 to complete this transition. In the
                                                                       study of the thermodynamics of model prions, Harrison et al.
                                                                       [35] demonstrated that proteins that are relatively less stable
                                                                       as monomers are more susceptible to forming alternative
                                                                       native states as homodimers. Fossey [36] calculated the
                                                                       energies of both the single b strand and the triply stacked b
                                                                       sheet for the B. mori silk protein; the results indicate that the
                                                                       later is more stable. Accordingly, we suggest that for silk
                                                                       fibroin the conversion of random coil to b strand is thermo-
                                                                       dynamically unfavorable for a single strand. Although the
                                                                       stacking of b strands may compensate the energy needed to
                                                                       convert random coil to b sheet, the ordered nucleus
                                                                       formation in the beginning requires a series of association
                                                                       steps that may also be thermodynamically unfavorable
Fig. 6. Temperature effect on the conformation transition of           owing to the loss of entropy by association [37]. Once a b
random coil to b sheet in 0.1 mg·mL21 silk fibroin solution. (A),      sheet nucleus is formed, further addition of the random coil
(B) and (C) reflects different transition speed in 0, 5, 20% seeded    renders the growth of aggregates thermodynamically
solutions, respectively, at different temperatures. CD spectra were    favorable because the contacts between random coil chains
recorded at 20 8C (curves 1, 4, 7), 60 8C (curves 2, 5, 8) and 95 8C   with growing aggregates are established at multiple sites
(curves 3, 6, 9). All samples were incubated for half an hour at a     [37]. As a result, the energy gained by this multiple site
predesignated temperature.                                             interaction outweighs the losses of both energy and entropy
                                                                       during the aggregate growth. Further evidence supporting
                                                                       this conjecture may be derived from a consideration of IR
ellipticity is protein-concentration-independent [34]. We              evidence of silk fibroin gel [38]. The silk fibroin gel is
therefore compared the molar ellipticity of a 0.1 mg·mL21              composed of the b sheet conformation formed from the
20% seeded silk fibroin solution with that of a                        regenerated silk fibroin aggregation. From FTIR spectrum
0.01 mg·mL21 20% seeded silk fibroin solution after a                  [38], it has been concluded that strong hydrogen bonding
233-h incubation, and found that the former had a larger               interactions exist in this silk fibroin gel, stabilizing the b
molar ellipticity by < 1 £ 103 degree·cm2·dmol21 at                    sheet aggregates.
q FEBS 2001                                           Viewing into silk fibroin conformation transition (Eur. J. Biochem. 268) 6605

Fig. 8. Schematic illustration of natural silk
spinning process. (a) Nucleation, which includes a
transition of random coil to b strand as well as a
formation of ordered b sheet aggregates (nuclei);
(b) aggregation growth, which involves coiled
chain changing its conformation on the preformed
b sheet nuclei, followed by formation of the larger
b sheet aggregation.

   In addition, it has been long considered that the protein         slow spinning speed of silk is readily rationalized. This slow
folding is hydrophobic interaction dependent. The high-              speed becomes necessary for the conformation transition
energy molecular collision is important to the enthalpy,             process, leading to the formation of well-oriented b sheet
entropy and heat capacity during the hydrophobic interaction         nuclei and liquid state to sustain the aggregation growth.
based on the potential of mean force perspective [39].                  Spek et al. [42] studied the role of the alanine sequence in
Obviously, the temperature increasing accelerates the                forming b sheet of spider-like polypeptide and demon-
molecular movement therefore leading to the molecular                strated experimentally that a buildup of the polypeptide
collision increase, consequently, speeding up the b sheet            strand by accretion of alanine domains with different lengths
aggregation.                                                         was nucleated by the domains with seven alanine residues,
   To obtain the further insights into the natural silk spinning     i.e. a b sheet core. Therefore, it is plausible that a nucleation-
mechanism of B. mori silkworm in vivo, we carried out the            dependent aggregation process exists in the formation of
experiments mimicking the spinning force of silkworm. It is          spider silk. It is also noted that the tensile properties of spider
well known that the shearing force can induce b sheet                silk are affected by the spinning speed, i.e. fast spinning leads
formation from the coiled chain [2 –5]. We find that the             to a higher modulus but a lower draw ratio [1]. It indicates
shearing force induced by injecting the silk fibroin solution        that the natural silk conformation conversion is controllable.
through an aperture, like a spinneret of silkworm, can lead to       Spider could control the stress force under given spinning
the b sheet formation (Fig. 1, curve d). The resultant b sheet       rate to control the formation of b sheet components that
can also promote the aggregation growth similar to the               determine the fibril tensile properties.
behavior of seeds produced by shaking the solution (see
Fig. 5D). We therefore propose that natural silk spinning
mechanism of silkworm is similar to that of a b sheet                CONCLUSION
aggregation process in the regenerated silk fibroin. As the          In this study, the coiled-chain to b sheet conformation
silk fibroin in the middle section of the silkworm gland is          change of silk fibroin is suggested to be a nucleation-
predominantly composed of the coiled chain, when the silk            dependent aggregation process. This mechanism may help
fibroin approaches the spinneret, the hydrogel-like silk             to explain the natural silk spinning process. The nucleus
fibroin is sheared by the silk press in the silkworm duct, or        formation, involving coil chain to b strand conversion
stressed by extensional flow, or simply stretched during the         followed by a b sheet aggregation, is a rate-limited step. The
spinning [11]; the molecular chain is thus stretched into            b sheet nucleation step is crucial for a smooth transition of
the b strand, followed by orderly alignment through self-            the random coil in the silkworm gland to the b sheet in the
assembly into a b sheet aggregate, or nucleus. This step is          crystalline form. Once nuclei are formed, the b sheet
rate-limited. Once b sheet nuclei are formed, the b sheet            aggregation growth process may obey a first order kinetic
aggregation growth occurs as the coiled chain associates             mechanism in vivo as in vitro.
with the preformed nuclei. The ordered b sheet fibrils are
formed when drawn by the head of the silkworm throughout
the spinneret into open air. The uniaxial orientation of the         ACKNOWLEDGEMENTS
ordered b sheet aggregate is along the direction of drawing          This work was supported by NSFC (no. 29974004, China); NSF
or shearing force [40]. The b sheet aggregation growth may           (no. 99ZA14001, Shanghai), the Laboratory of MRAMP (no. 991504,
follow a first order kinetic process with respect to the silk        China) and the Foundation for University Key Teacher by the Ministry
fibroin concentration in the duct of silkworm. Figure 8              of Education. Authors wish to acknowledge Wuhan Institute of Physics
schematically illustrates the proposed mechanism of the              and Mathematics of the Chinese Academy of Science for supplying the
natural silk spinning process. We believe that defects shown         SYBYL software for the protein energy calculation. Helpful discussions
in many morphology pictures of the crystalline silk reported         with Prof. Steve C. F. Au-Yeung and Prof. S. L. Lam of the Chinese
elsewhere [41] arise from the nonordered alignment during            University of Hong Kong are also gratefully acknowledged.
the aggregation. The liquid crystalline phase exists in the
silkworm gland [40] where the concentration of silk fibroin
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